Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
BDNFP23560 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
BDNFP23560 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
BDNFP23560 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.44■□□□□ 0.22
BDNFP23560 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
BDNFP23560 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.44■□□□□ 0.22
BDNFP23560 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
BDNFP23560 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.44■□□□□ 0.22
BDNFP23560 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
BDNFP23560 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.44■□□□□ 0.22
BDNFP23560 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.44■□□□□ 0.22
BDNFP23560 AC008735.3-201ENST00000596646 500 ntBASIC16.44■□□□□ 0.22
BDNFP23560 AC107373.2-201ENST00000607735 490 ntBASIC16.44■□□□□ 0.22
BDNFP23560 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
BDNFP23560 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.44■□□□□ 0.22
BDNFP23560 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.44■□□□□ 0.22
BDNFP23560 AC092850.2-201ENST00000623821 2697 ntBASIC16.44■□□□□ 0.22
BDNFP23560 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.44■□□□□ 0.22
BDNFP23560 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.44■□□□□ 0.22
BDNFP23560 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
BDNFP23560 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
BDNFP23560 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
BDNFP23560 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
BDNFP23560 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.44■□□□□ 0.22
BDNFP23560 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.44■□□□□ 0.22
BDNFP23560 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
BDNFP23560 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
BDNFP23560 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
BDNFP23560 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.43■□□□□ 0.22
BDNFP23560 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.43■□□□□ 0.22
BDNFP23560 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.43■□□□□ 0.22
BDNFP23560 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
BDNFP23560 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 OR8S1-201ENST00000310194 1080 ntBASIC16.43■□□□□ 0.22
BDNFP23560 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.43■□□□□ 0.22
BDNFP23560 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 ENPP7P5-201ENST00000541031 1031 ntBASIC16.43■□□□□ 0.22
BDNFP23560 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.43■□□□□ 0.22
BDNFP23560 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.43■□□□□ 0.22
BDNFP23560 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.43■□□□□ 0.22
BDNFP23560 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
BDNFP23560 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
BDNFP23560 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
BDNFP23560 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.43■□□□□ 0.22
BDNFP23560 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.43■□□□□ 0.22
BDNFP23560 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 AC068418.2-201ENST00000577309 3703 ntBASIC16.43■□□□□ 0.22
BDNFP23560 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BDNFP23560 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.43■□□□□ 0.22
BDNFP23560 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.42■□□□□ 0.22
BDNFP23560 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
BDNFP23560 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.42■□□□□ 0.22
BDNFP23560 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.42■□□□□ 0.22
BDNFP23560 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.42■□□□□ 0.22
BDNFP23560 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.42■□□□□ 0.22
BDNFP23560 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.42■□□□□ 0.22
BDNFP23560 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.42■□□□□ 0.22
BDNFP23560 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
BDNFP23560 TDH-203ENST00000531764 1110 ntBASIC16.42■□□□□ 0.22
BDNFP23560 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.42■□□□□ 0.22
BDNFP23560 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.42■□□□□ 0.22
BDNFP23560 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
BDNFP23560 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.42■□□□□ 0.22
BDNFP23560 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.42■□□□□ 0.22
BDNFP23560 AC025181.2-201ENST00000606994 802 ntBASIC16.42■□□□□ 0.22
BDNFP23560 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
BDNFP23560 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC16.42■□□□□ 0.22
BDNFP23560 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.42■□□□□ 0.22
BDNFP23560 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms