Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.08■□□□□ 0.16
TOP3BO95985 AC011495.1-201ENST00000498085 584 ntBASIC16.08■□□□□ 0.16
TOP3BO95985 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.08■□□□□ 0.16
TOP3BO95985 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.08■□□□□ 0.16
TOP3BO95985 SNX29P1-201ENST00000548357 1007 ntBASIC16.08■□□□□ 0.16
TOP3BO95985 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TOP3BO95985 AL109954.1-202ENST00000564051 2148 ntBASIC16.08■□□□□ 0.16
TOP3BO95985 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.08■□□□□ 0.16
TOP3BO95985 AC007967.4-201ENST00000614700 386 ntBASIC16.08■□□□□ 0.16
TOP3BO95985 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.08■□□□□ 0.16
TOP3BO95985 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.08■□□□□ 0.16
TOP3BO95985 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
TOP3BO95985 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TOP3BO95985 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
TOP3BO95985 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TOP3BO95985 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TOP3BO95985 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TOP3BO95985 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TOP3BO95985 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.08■□□□□ 0.16
TOP3BO95985 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TOP3BO95985 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TOP3BO95985 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
TOP3BO95985 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TOP3BO95985 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TOP3BO95985 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.08■□□□□ 0.16
TOP3BO95985 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
TOP3BO95985 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TOP3BO95985 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TOP3BO95985 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.07■□□□□ 0.16
TOP3BO95985 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TOP3BO95985 AC134407.2-201ENST00000625089 1978 ntBASIC16.07■□□□□ 0.16
TOP3BO95985 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
TOP3BO95985 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TOP3BO95985 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.07■□□□□ 0.16
TOP3BO95985 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.07■□□□□ 0.16
TOP3BO95985 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TOP3BO95985 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.07■□□□□ 0.16
TOP3BO95985 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.07■□□□□ 0.16
TOP3BO95985 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TOP3BO95985 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TOP3BO95985 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TOP3BO95985 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TOP3BO95985 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.07■□□□□ 0.16
TOP3BO95985 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TOP3BO95985 TMEM14DP-201ENST00000422205 345 ntBASIC16.07■□□□□ 0.16
TOP3BO95985 RN7SL837P-201ENST00000463010 287 ntBASIC16.07■□□□□ 0.16
TOP3BO95985 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.07■□□□□ 0.16
TOP3BO95985 AC135586.1-201ENST00000539323 574 ntBASIC16.07■□□□□ 0.16
TOP3BO95985 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.07■□□□□ 0.16
TOP3BO95985 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
TOP3BO95985 MIR6775-201ENST00000617557 69 ntBASIC16.07■□□□□ 0.16
TOP3BO95985 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC16.07■□□□□ 0.16
TOP3BO95985 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
TOP3BO95985 AC087499.5-201ENST00000452760 1342 ntBASIC16.07■□□□□ 0.16
TOP3BO95985 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.07■□□□□ 0.16
TOP3BO95985 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.07■□□□□ 0.16
TOP3BO95985 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
TOP3BO95985 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TOP3BO95985 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.07■□□□□ 0.16
TOP3BO95985 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TOP3BO95985 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TOP3BO95985 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
TOP3BO95985 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.07■□□□□ 0.16
TOP3BO95985 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TOP3BO95985 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
TOP3BO95985 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
TOP3BO95985 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
TOP3BO95985 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TOP3BO95985 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TOP3BO95985 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TOP3BO95985 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.06■□□□□ 0.16
TOP3BO95985 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
TOP3BO95985 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.06■□□□□ 0.16
TOP3BO95985 AC073439.1-201ENST00000624121 1774 ntBASIC16.06■□□□□ 0.16
TOP3BO95985 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TOP3BO95985 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TOP3BO95985 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
TOP3BO95985 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC16.06■□□□□ 0.16
TOP3BO95985 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.06■□□□□ 0.16
TOP3BO95985 AC142381.1-201ENST00000426099 345 ntBASIC16.06■□□□□ 0.16
TOP3BO95985 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC16.06■□□□□ 0.16
TOP3BO95985 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.06■□□□□ 0.16
TOP3BO95985 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.06■□□□□ 0.16
TOP3BO95985 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.06■□□□□ 0.16
TOP3BO95985 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.06■□□□□ 0.16
TOP3BO95985 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC16.06■□□□□ 0.16
TOP3BO95985 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.06■□□□□ 0.16
TOP3BO95985 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms