Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC188H7C350 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC16.29■□□□□ 0.2
CCDC188H7C350 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
CCDC188H7C350 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC188H7C350 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC188H7C350 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC188H7C350 AC139749.1-202ENST00000617529 3139 ntBASIC16.29■□□□□ 0.2
CCDC188H7C350 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC188H7C350 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CCDC188H7C350 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC188H7C350 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CCDC188H7C350 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CCDC188H7C350 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CCDC188H7C350 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC188H7C350 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC188H7C350 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC188H7C350 CICP11-201ENST00000434745 2827 ntBASIC16.28■□□□□ 0.2
CCDC188H7C350 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC188H7C350 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC188H7C350 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC188H7C350 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC188H7C350 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC188H7C350 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CCDC188H7C350 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC188H7C350 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC16.28■□□□□ 0.2
CCDC188H7C350 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CCDC188H7C350 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC188H7C350 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC188H7C350 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.28■□□□□ 0.2
CCDC188H7C350 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC188H7C350 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC188H7C350 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC188H7C350 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.28■□□□□ 0.2
CCDC188H7C350 GHSR-202ENST00000427970 912 ntBASIC16.28■□□□□ 0.2
CCDC188H7C350 RNA5SP419-201ENST00000515908 135 ntBASIC16.28■□□□□ 0.2
CCDC188H7C350 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC188H7C350 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC188H7C350 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.28■□□□□ 0.2
CCDC188H7C350 AP001005.1-201ENST00000571755 1248 ntBASIC16.28■□□□□ 0.2
CCDC188H7C350 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC188H7C350 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC188H7C350 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC188H7C350 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CCDC188H7C350 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC188H7C350 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC188H7C350 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC188H7C350 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC188H7C350 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC188H7C350 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CCDC188H7C350 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC188H7C350 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC188H7C350 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.28■□□□□ 0.2
CCDC188H7C350 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC188H7C350 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC188H7C350 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC188H7C350 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC188H7C350 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC188H7C350 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC188H7C350 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
CCDC188H7C350 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC188H7C350 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC188H7C350 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC188H7C350 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC188H7C350 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC188H7C350 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC188H7C350 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC188H7C350 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC188H7C350 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.27■□□□□ 0.2
CCDC188H7C350 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC188H7C350 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC188H7C350 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC188H7C350 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC188H7C350 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.27■□□□□ 0.2
CCDC188H7C350 FAAHP1-202ENST00000446499 1238 ntBASIC16.27■□□□□ 0.2
CCDC188H7C350 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CCDC188H7C350 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC188H7C350 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.27■□□□□ 0.2
CCDC188H7C350 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.27■□□□□ 0.2
CCDC188H7C350 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.27■□□□□ 0.2
CCDC188H7C350 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC16.27■□□□□ 0.2
CCDC188H7C350 AL135744.1-201ENST00000565098 629 ntBASIC16.27■□□□□ 0.2
CCDC188H7C350 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
CCDC188H7C350 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.27■□□□□ 0.2
CCDC188H7C350 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC188H7C350 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.27■□□□□ 0.2
CCDC188H7C350 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC188H7C350 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.27■□□□□ 0.2
CCDC188H7C350 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC188H7C350 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
CCDC188H7C350 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC188H7C350 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC188H7C350 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC188H7C350 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC188H7C350 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC188H7C350 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
CCDC188H7C350 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC188H7C350 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
CCDC188H7C350 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.27■□□□□ 0.19
CCDC188H7C350 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC188H7C350 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms