Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 SYS1-203ENST00000414310 795 ntTSL 3 BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 INO80C-206ENST00000586489 594 ntTSL 3 BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 RNA5-8SN1-201ENST00000610460 153 ntBASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 RNA5-8SN5-202ENST00000612463 153 ntBASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 RNA5-8SN4-201ENST00000613359 153 ntBASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 RNA5-8SN5-201ENST00000619471 153 ntBASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 RAC2-204ENST00000406508 893 ntTSL 5 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 HNRNPA1P40-201ENST00000426371 1278 ntBASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 KRT18P43-201ENST00000469825 1281 ntBASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SMC4Q9NTJ3 MFF-204ENST00000353339 2186 ntTSL 5 BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 AL133267.1-201ENST00000398220 340 ntBASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 REEP4-207ENST00000523293 913 ntTSL 3 BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 FTH1-202ENST00000526640 786 ntTSL 2 BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 AL158212.4-201ENST00000624062 1286 ntBASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC4Q9NTJ3 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 CELP-203ENST00000624767 2414 ntTSL 5 BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms