Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.91■□□□□ 0.62
VPS53Q5VIR6 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 GNAQP1-201ENST00000444815 1067 ntBASIC18.9■□□□□ 0.62
VPS53Q5VIR6 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS53Q5VIR6 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
VPS53Q5VIR6 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS53Q5VIR6 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC18.89■□□□□ 0.62
VPS53Q5VIR6 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS53Q5VIR6 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
VPS53Q5VIR6 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS53Q5VIR6 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 MYB-242ENST00000618728 3545 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 AC236430.1-201ENST00000402231 743 ntBASIC18.89■□□□□ 0.61
VPS53Q5VIR6 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 MIR600HG-201ENST00000449175 5984 ntBASIC18.89■□□□□ 0.61
VPS53Q5VIR6 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 BTBD7P1-201ENST00000447253 1453 ntBASIC18.89■□□□□ 0.61
VPS53Q5VIR6 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
VPS53Q5VIR6 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms