Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.8□□□□□ -0.04
RFX3P48380 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.8□□□□□ -0.04
RFX3P48380 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.8□□□□□ -0.04
RFX3P48380 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC14.8□□□□□ -0.04
RFX3P48380 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC14.8□□□□□ -0.04
RFX3P48380 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC14.8□□□□□ -0.04
RFX3P48380 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.8□□□□□ -0.04
RFX3P48380 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.8□□□□□ -0.04
RFX3P48380 AC025678.2-201ENST00000562061 970 ntBASIC14.8□□□□□ -0.04
RFX3P48380 LITAF-210ENST00000571976 548 ntTSL 2 BASIC14.8□□□□□ -0.04
RFX3P48380 LITAF-214ENST00000574703 486 ntTSL 2 BASIC14.8□□□□□ -0.04
RFX3P48380 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.8□□□□□ -0.04
RFX3P48380 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
RFX3P48380 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.8□□□□□ -0.04
RFX3P48380 GPALPP1-207ENST00000611650 899 ntBASIC14.8□□□□□ -0.04
RFX3P48380 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.8□□□□□ -0.04
RFX3P48380 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.8□□□□□ -0.04
RFX3P48380 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX3P48380 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.8□□□□□ -0.04
RFX3P48380 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX3P48380 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX3P48380 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX3P48380 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX3P48380 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX3P48380 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.8□□□□□ -0.04
RFX3P48380 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RFX3P48380 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RFX3P48380 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX3P48380 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX3P48380 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX3P48380 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.8□□□□□ -0.04
RFX3P48380 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX3P48380 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
RFX3P48380 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.79□□□□□ -0.04
RFX3P48380 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.79□□□□□ -0.04
RFX3P48380 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.79□□□□□ -0.04
RFX3P48380 CNN2P2-201ENST00000443536 909 ntBASIC14.79□□□□□ -0.04
RFX3P48380 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.79□□□□□ -0.04
RFX3P48380 CNN2P3-201ENST00000450201 906 ntBASIC14.79□□□□□ -0.04
RFX3P48380 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.79□□□□□ -0.04
RFX3P48380 KRT8P37-201ENST00000451609 1420 ntBASIC14.79□□□□□ -0.04
RFX3P48380 KRT18P28-201ENST00000453838 1332 ntBASIC14.79□□□□□ -0.04
RFX3P48380 AC125807.1-201ENST00000483097 614 ntBASIC14.79□□□□□ -0.04
RFX3P48380 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 HLA-J-203ENST00000494367 1087 ntBASIC14.79□□□□□ -0.04
RFX3P48380 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.79□□□□□ -0.04
RFX3P48380 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
RFX3P48380 AC069262.1-201ENST00000539058 672 ntBASIC14.79□□□□□ -0.04
RFX3P48380 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
RFX3P48380 RN7SL828P-201ENST00000607615 303 ntBASIC14.79□□□□□ -0.04
RFX3P48380 AC006538.3-201ENST00000612495 578 ntBASIC14.79□□□□□ -0.04
RFX3P48380 AC007967.4-201ENST00000614700 386 ntBASIC14.79□□□□□ -0.04
RFX3P48380 AL136317.3-201ENST00000618497 906 ntBASIC14.79□□□□□ -0.04
RFX3P48380 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.79□□□□□ -0.04
RFX3P48380 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.79□□□□□ -0.04
RFX3P48380 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.79□□□□□ -0.04
RFX3P48380 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RFX3P48380 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC14.79□□□□□ -0.04
RFX3P48380 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
RFX3P48380 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
RFX3P48380 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
RFX3P48380 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
RFX3P48380 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC14.78□□□□□ -0.04
RFX3P48380 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms