Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 HLA-DQB2-231ENST00000435145 2026 ntBASIC13.93□□□□□ -0.18
SKA3Q8IX90 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 AC055876.3-201ENST00000431496 288 ntBASIC13.93□□□□□ -0.18
SKA3Q8IX90 NME4-207ENST00000450036 985 ntTSL 3 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 SERBP1P3-201ENST00000459980 809 ntBASIC13.93□□□□□ -0.18
SKA3Q8IX90 MDH2-205ENST00000461263 648 ntTSL 2 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 MPI-209ENST00000564003 1195 ntTSL 2 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 AC138649.4-201ENST00000612222 287 ntBASIC13.93□□□□□ -0.18
SKA3Q8IX90 AL590560.3-201ENST00000623350 461 ntBASIC13.93□□□□□ -0.18
SKA3Q8IX90 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 CICP4-201ENST00000447359 2812 ntBASIC13.93□□□□□ -0.18
SKA3Q8IX90 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 WARS-232ENST00000556645 2508 ntTSL 5 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 AC138035.3-201ENST00000622706 2791 ntBASIC13.93□□□□□ -0.18
SKA3Q8IX90 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC13.93□□□□□ -0.18
SKA3Q8IX90 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SKA3Q8IX90 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 AC100757.3-201ENST00000622361 1406 ntBASIC13.92□□□□□ -0.18
SKA3Q8IX90 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 KLK8-202ENST00000320838 456 ntTSL 5 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 RAC2-202ENST00000401529 569 ntTSL 4 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 CENPM-205ENST00000404067 905 ntTSL 3 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 CENPM-206ENST00000407253 818 ntTSL 2 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 LY6E-204ENST00000519546 971 ntTSL 2 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms