Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC16.2■□□□□ 0.18
NEK3P51956 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 HAUS4P1-201ENST00000406739 1145 ntBASIC16.2■□□□□ 0.18
NEK3P51956 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.2■□□□□ 0.18
NEK3P51956 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.2■□□□□ 0.18
NEK3P51956 COX20P2-201ENST00000452636 358 ntBASIC16.2■□□□□ 0.18
NEK3P51956 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 SERBP1P5-201ENST00000510079 1181 ntBASIC16.2■□□□□ 0.18
NEK3P51956 AC009407.1-201ENST00000568958 598 ntBASIC16.2■□□□□ 0.18
NEK3P51956 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.2■□□□□ 0.18
NEK3P51956 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.2■□□□□ 0.18
NEK3P51956 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
NEK3P51956 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
NEK3P51956 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
NEK3P51956 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
NEK3P51956 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
NEK3P51956 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
NEK3P51956 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.19■□□□□ 0.18
NEK3P51956 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.19■□□□□ 0.18
NEK3P51956 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.19■□□□□ 0.18
NEK3P51956 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
NEK3P51956 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
NEK3P51956 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.19■□□□□ 0.18
NEK3P51956 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.19■□□□□ 0.18
NEK3P51956 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC16.19■□□□□ 0.18
NEK3P51956 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
NEK3P51956 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.19■□□□□ 0.18
NEK3P51956 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.19■□□□□ 0.18
NEK3P51956 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.19■□□□□ 0.18
NEK3P51956 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
NEK3P51956 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
NEK3P51956 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.19■□□□□ 0.18
NEK3P51956 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.19■□□□□ 0.18
NEK3P51956 ZNF890P-202ENST00000530367 1156 ntBASIC16.19■□□□□ 0.18
NEK3P51956 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.19■□□□□ 0.18
NEK3P51956 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 AL512361.1-201ENST00000554200 418 ntBASIC16.19■□□□□ 0.18
NEK3P51956 AC010336.2-201ENST00000564226 506 ntBASIC16.19■□□□□ 0.18
NEK3P51956 AC008738.7-201ENST00000609744 511 ntBASIC16.19■□□□□ 0.18
NEK3P51956 AL033527.5-202ENST00000641632 1098 ntBASIC16.19■□□□□ 0.18
NEK3P51956 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
NEK3P51956 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.19■□□□□ 0.18
NEK3P51956 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.19■□□□□ 0.18
NEK3P51956 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.19■□□□□ 0.18
NEK3P51956 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
NEK3P51956 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
NEK3P51956 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 CYP4F24P-201ENST00000586049 1580 ntBASIC16.18■□□□□ 0.18
NEK3P51956 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.18■□□□□ 0.18
NEK3P51956 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.18■□□□□ 0.18
NEK3P51956 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms