Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.39□□□□□ -0.11
MSX1P28360 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.39□□□□□ -0.11
MSX1P28360 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.39□□□□□ -0.11
MSX1P28360 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
MSX1P28360 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
MSX1P28360 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX1P28360 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX1P28360 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX1P28360 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX1P28360 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
MSX1P28360 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX1P28360 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.38□□□□□ -0.11
MSX1P28360 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
MSX1P28360 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX1P28360 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
MSX1P28360 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
MSX1P28360 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
MSX1P28360 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
MSX1P28360 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
MSX1P28360 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
MSX1P28360 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.38□□□□□ -0.11
MSX1P28360 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.38□□□□□ -0.11
MSX1P28360 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX1P28360 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.38□□□□□ -0.11
MSX1P28360 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX1P28360 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
MSX1P28360 AC087499.6-201ENST00000411576 835 ntBASIC14.38□□□□□ -0.11
MSX1P28360 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC14.38□□□□□ -0.11
MSX1P28360 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.38□□□□□ -0.11
MSX1P28360 GIMAP3P-201ENST00000495150 836 ntBASIC14.38□□□□□ -0.11
MSX1P28360 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
MSX1P28360 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
MSX1P28360 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC14.38□□□□□ -0.11
MSX1P28360 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.38□□□□□ -0.11
MSX1P28360 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC14.38□□□□□ -0.11
MSX1P28360 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
MSX1P28360 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX1P28360 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
MSX1P28360 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.38□□□□□ -0.11
MSX1P28360 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX1P28360 NORAD-201ENST00000565493 5339 ntBASIC14.38□□□□□ -0.11
MSX1P28360 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.38□□□□□ -0.11
MSX1P28360 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
MSX1P28360 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX1P28360 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MSX1P28360 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
MSX1P28360 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.37□□□□□ -0.11
MSX1P28360 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.37□□□□□ -0.11
MSX1P28360 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.37□□□□□ -0.11
MSX1P28360 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC14.37□□□□□ -0.11
MSX1P28360 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC14.37□□□□□ -0.11
MSX1P28360 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.37□□□□□ -0.11
MSX1P28360 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
MSX1P28360 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.37□□□□□ -0.11
MSX1P28360 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.37□□□□□ -0.11
MSX1P28360 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
MSX1P28360 AP006294.1-201ENST00000415407 339 ntBASIC14.37□□□□□ -0.11
MSX1P28360 TOMM22P5-201ENST00000416399 439 ntBASIC14.37□□□□□ -0.11
MSX1P28360 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.37□□□□□ -0.11
MSX1P28360 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.37□□□□□ -0.11
MSX1P28360 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.37□□□□□ -0.11
MSX1P28360 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.37□□□□□ -0.11
MSX1P28360 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC14.37□□□□□ -0.11
MSX1P28360 AC104794.3-201ENST00000566840 1248 ntBASIC14.37□□□□□ -0.11
MSX1P28360 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.37□□□□□ -0.11
MSX1P28360 AP001002.2-201ENST00000625137 386 ntBASIC14.37□□□□□ -0.11
MSX1P28360 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
MSX1P28360 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
MSX1P28360 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX1P28360 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
MSX1P28360 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms