Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VIMP08670 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
VIMP08670 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
VIMP08670 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC15.85■□□□□ 0.13
VIMP08670 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC15.85■□□□□ 0.13
VIMP08670 AC018892.3-201ENST00000623986 2499 ntBASIC15.85■□□□□ 0.13
VIMP08670 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC15.85■□□□□ 0.13
VIMP08670 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
VIMP08670 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
VIMP08670 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC15.85■□□□□ 0.13
VIMP08670 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
VIMP08670 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC15.84■□□□□ 0.13
VIMP08670 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
VIMP08670 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.84■□□□□ 0.13
VIMP08670 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
VIMP08670 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.84■□□□□ 0.13
VIMP08670 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
VIMP08670 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.84■□□□□ 0.13
VIMP08670 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
VIMP08670 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC15.84■□□□□ 0.13
VIMP08670 FXN-203ENST00000396366 922 ntTSL 2 BASIC15.84■□□□□ 0.13
VIMP08670 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC15.84■□□□□ 0.13
VIMP08670 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.84■□□□□ 0.13
VIMP08670 TSSC2-201ENST00000450217 709 ntBASIC15.84■□□□□ 0.13
VIMP08670 AC092329.2-201ENST00000598402 547 ntBASIC15.84■□□□□ 0.13
VIMP08670 AL139288.1-201ENST00000623748 933 ntBASIC15.84■□□□□ 0.13
VIMP08670 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
VIMP08670 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC15.84■□□□□ 0.13
VIMP08670 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
VIMP08670 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
VIMP08670 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.84■□□□□ 0.13
VIMP08670 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.84■□□□□ 0.13
VIMP08670 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 BX640514.1-201ENST00000583223 1918 ntBASIC15.84■□□□□ 0.13
VIMP08670 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.84■□□□□ 0.13
VIMP08670 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VIMP08670 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC15.84■□□□□ 0.13
VIMP08670 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
VIMP08670 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VIMP08670 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
VIMP08670 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.13
VIMP08670 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VIMP08670 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.83■□□□□ 0.12
VIMP08670 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.83■□□□□ 0.12
VIMP08670 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
VIMP08670 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VIMP08670 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
VIMP08670 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
VIMP08670 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.83■□□□□ 0.12
VIMP08670 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC15.83■□□□□ 0.12
VIMP08670 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VIMP08670 AC104819.1-201ENST00000504587 486 ntBASIC15.83■□□□□ 0.12
VIMP08670 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC15.83■□□□□ 0.12
VIMP08670 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VIMP08670 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC15.83■□□□□ 0.12
VIMP08670 AP002414.4-201ENST00000589764 1148 ntBASIC15.83■□□□□ 0.12
VIMP08670 AC091076.1-201ENST00000610741 619 ntBASIC15.83■□□□□ 0.12
VIMP08670 CCNC-219ENST00000627680 896 ntTSL 5 BASIC15.83■□□□□ 0.12
VIMP08670 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
VIMP08670 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC15.83■□□□□ 0.12
VIMP08670 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
VIMP08670 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15.83■□□□□ 0.12
VIMP08670 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC15.83■□□□□ 0.12
VIMP08670 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VIMP08670 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VIMP08670 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC15.83■□□□□ 0.12
VIMP08670 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.83■□□□□ 0.12
VIMP08670 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
VIMP08670 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
VIMP08670 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VIMP08670 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
VIMP08670 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VIMP08670 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
VIMP08670 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms