Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
RNF40O75150 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RNF40O75150 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
RNF40O75150 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
RNF40O75150 MIR346-201ENST00000362234 95 ntBASIC17.04■□□□□ 0.32
RNF40O75150 AC073575.1-201ENST00000551125 596 ntTSL 3 BASIC17.04■□□□□ 0.32
RNF40O75150 MIR3909-201ENST00000579518 119 ntBASIC17.04■□□□□ 0.32
RNF40O75150 AP003400.6-201ENST00000624698 740 ntBASIC17.04■□□□□ 0.32
RNF40O75150 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.04■□□□□ 0.32
RNF40O75150 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF40O75150 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF40O75150 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RNF40O75150 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF40O75150 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.04■□□□□ 0.32
RNF40O75150 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF40O75150 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RNF40O75150 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF40O75150 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF40O75150 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RNF40O75150 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RNF40O75150 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF40O75150 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.04■□□□□ 0.32
RNF40O75150 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
RNF40O75150 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC17.04■□□□□ 0.32
RNF40O75150 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.04■□□□□ 0.32
RNF40O75150 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF40O75150 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNF40O75150 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
RNF40O75150 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RNF40O75150 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF40O75150 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF40O75150 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF40O75150 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF40O75150 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF40O75150 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC17.03■□□□□ 0.32
RNF40O75150 AC126755.1-201ENST00000525846 6405 ntBASIC17.03■□□□□ 0.32
RNF40O75150 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RNF40O75150 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RNF40O75150 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RNF40O75150 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.03■□□□□ 0.32
RNF40O75150 AC092580.3-201ENST00000430932 139 ntBASIC17.03■□□□□ 0.32
RNF40O75150 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.03■□□□□ 0.32
RNF40O75150 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF40O75150 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.03■□□□□ 0.32
RNF40O75150 MIR4453-201ENST00000584019 89 ntBASIC17.03■□□□□ 0.32
RNF40O75150 AC013467.2-201ENST00000605472 835 ntBASIC17.03■□□□□ 0.32
RNF40O75150 AP001350.2-201ENST00000625104 1094 ntBASIC17.03■□□□□ 0.32
RNF40O75150 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.03■□□□□ 0.32
RNF40O75150 GRK6P1-201ENST00000400595 1711 ntBASIC17.03■□□□□ 0.32
RNF40O75150 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC17.03■□□□□ 0.32
RNF40O75150 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC17.03■□□□□ 0.32
RNF40O75150 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF40O75150 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF40O75150 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF40O75150 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC17.03■□□□□ 0.32
RNF40O75150 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNF40O75150 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RNF40O75150 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.03■□□□□ 0.32
RNF40O75150 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
RNF40O75150 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC17.03■□□□□ 0.32
RNF40O75150 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.03■□□□□ 0.32
RNF40O75150 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC17.03■□□□□ 0.32
RNF40O75150 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RNF40O75150 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNF40O75150 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.02■□□□□ 0.32
RNF40O75150 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
RNF40O75150 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNF40O75150 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNF40O75150 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNF40O75150 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNF40O75150 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC17.02■□□□□ 0.32
RNF40O75150 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RNF40O75150 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC17.02■□□□□ 0.32
RNF40O75150 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNF40O75150 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNF40O75150 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RNF40O75150 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNF40O75150 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
RNF40O75150 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.02■□□□□ 0.32
RNF40O75150 AC084866.2-201ENST00000509956 449 ntTSL 2 BASIC17.02■□□□□ 0.32
RNF40O75150 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RNF40O75150 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.02■□□□□ 0.32
RNF40O75150 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.02■□□□□ 0.32
RNF40O75150 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC17.02■□□□□ 0.32
RNF40O75150 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
RNF40O75150 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
RNF40O75150 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.02■□□□□ 0.31
RNF40O75150 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
RNF40O75150 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
RNF40O75150 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
RNF40O75150 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.02■□□□□ 0.31
RNF40O75150 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
RNF40O75150 AC131009.4-201ENST00000624048 1740 ntBASIC17.01■□□□□ 0.31
RNF40O75150 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RNF40O75150 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC17.01■□□□□ 0.31
RNF40O75150 AC007191.1-201ENST00000623179 2995 ntBASIC17.01■□□□□ 0.31
RNF40O75150 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC17.01■□□□□ 0.31
RNF40O75150 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
RNF40O75150 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.01■□□□□ 0.31
RNF40O75150 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms