Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.51■□□□□ 0.39
MSH4O15457 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.5■□□□□ 0.39
MSH4O15457 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
MSH4O15457 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 AC087481.3-201ENST00000602886 1894 ntBASIC17.5■□□□□ 0.39
MSH4O15457 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC17.5■□□□□ 0.39
MSH4O15457 SSR4P1-203ENST00000599569 2260 ntBASIC17.5■□□□□ 0.39
MSH4O15457 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
MSH4O15457 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.5■□□□□ 0.39
MSH4O15457 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC17.5■□□□□ 0.39
MSH4O15457 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
MSH4O15457 SOCS2P1-201ENST00000417727 557 ntBASIC17.5■□□□□ 0.39
MSH4O15457 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
MSH4O15457 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
MSH4O15457 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
MSH4O15457 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC17.5■□□□□ 0.39
MSH4O15457 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.5■□□□□ 0.39
MSH4O15457 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC17.5■□□□□ 0.39
MSH4O15457 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 CU634019.7-201ENST00000624153 1185 ntBASIC17.5■□□□□ 0.39
MSH4O15457 FP236241.2-201ENST00000624906 1185 ntBASIC17.5■□□□□ 0.39
MSH4O15457 ABBA01031660.1-201ENST00000635219 756 ntBASIC17.5■□□□□ 0.39
MSH4O15457 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
MSH4O15457 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC17.5■□□□□ 0.39
MSH4O15457 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
MSH4O15457 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
MSH4O15457 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSH4O15457 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC17.49■□□□□ 0.39
MSH4O15457 AC063926.2-201ENST00000623766 1308 ntBASIC17.49■□□□□ 0.39
MSH4O15457 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.49■□□□□ 0.39
MSH4O15457 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH4O15457 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
MSH4O15457 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH4O15457 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH4O15457 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.49■□□□□ 0.39
MSH4O15457 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
MSH4O15457 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH4O15457 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC17.49■□□□□ 0.39
MSH4O15457 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH4O15457 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH4O15457 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH4O15457 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH4O15457 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC17.49■□□□□ 0.39
MSH4O15457 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.49■□□□□ 0.39
MSH4O15457 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.49■□□□□ 0.39
MSH4O15457 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC17.49■□□□□ 0.39
MSH4O15457 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC17.49■□□□□ 0.39
MSH4O15457 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
MSH4O15457 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH4O15457 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.49■□□□□ 0.39
MSH4O15457 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH4O15457 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.49■□□□□ 0.39
MSH4O15457 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH4O15457 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH4O15457 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH4O15457 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
MSH4O15457 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
MSH4O15457 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH4O15457 LCK-206ENST00000373564 2137 ntTSL 5 BASIC17.48■□□□□ 0.39
MSH4O15457 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
MSH4O15457 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH4O15457 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.48■□□□□ 0.39
MSH4O15457 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH4O15457 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH4O15457 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MSH4O15457 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH4O15457 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH4O15457 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH4O15457 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH4O15457 TEX30-203ENST00000376022 828 ntTSL 2 BASIC17.48■□□□□ 0.39
MSH4O15457 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.48■□□□□ 0.39
MSH4O15457 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC17.48■□□□□ 0.39
MSH4O15457 AL162726.2-201ENST00000438986 1017 ntBASIC17.48■□□□□ 0.39
MSH4O15457 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.48■□□□□ 0.39
MSH4O15457 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC17.48■□□□□ 0.39
MSH4O15457 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MSH4O15457 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC17.48■□□□□ 0.39
MSH4O15457 CLUHP6-201ENST00000580789 941 ntBASIC17.48■□□□□ 0.39
MSH4O15457 AC010319.3-201ENST00000597028 470 ntBASIC17.48■□□□□ 0.39
MSH4O15457 AC093813.1-201ENST00000605066 256 ntBASIC17.48■□□□□ 0.39
MSH4O15457 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC17.48■□□□□ 0.39
MSH4O15457 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH4O15457 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
MSH4O15457 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms