Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SOX1O00570 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC16.42■□□□□ 0.22
SOX1O00570 LINC01144-201ENST00000626198 1710 ntBASIC16.42■□□□□ 0.22
SOX1O00570 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.42■□□□□ 0.22
SOX1O00570 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.42■□□□□ 0.22
SOX1O00570 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SOX1O00570 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.41■□□□□ 0.22
SOX1O00570 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.41■□□□□ 0.22
SOX1O00570 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SOX1O00570 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.41■□□□□ 0.22
SOX1O00570 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SOX1O00570 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.41■□□□□ 0.22
SOX1O00570 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX1O00570 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.41■□□□□ 0.22
SOX1O00570 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX1O00570 FAM90A2P-201ENST00000511144 1395 ntBASIC16.41■□□□□ 0.22
SOX1O00570 FAM90A25P-201ENST00000528404 1395 ntBASIC16.41■□□□□ 0.22
SOX1O00570 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.41■□□□□ 0.22
SOX1O00570 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX1O00570 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SOX1O00570 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
SOX1O00570 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX1O00570 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX1O00570 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX1O00570 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.41■□□□□ 0.22
SOX1O00570 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SOX1O00570 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX1O00570 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SOX1O00570 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX1O00570 AC004522.1-201ENST00000419978 654 ntBASIC16.41■□□□□ 0.22
SOX1O00570 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.41■□□□□ 0.22
SOX1O00570 KRT17P4-201ENST00000429445 819 ntBASIC16.41■□□□□ 0.22
SOX1O00570 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SOX1O00570 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC16.41■□□□□ 0.22
SOX1O00570 TMCO5B-205ENST00000530020 894 ntBASIC16.41■□□□□ 0.22
SOX1O00570 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SOX1O00570 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC16.41■□□□□ 0.22
SOX1O00570 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
SOX1O00570 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC16.41■□□□□ 0.22
SOX1O00570 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC16.41■□□□□ 0.22
SOX1O00570 AC073592.2-201ENST00000623062 780 ntBASIC16.41■□□□□ 0.22
SOX1O00570 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.41■□□□□ 0.22
SOX1O00570 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.41■□□□□ 0.22
SOX1O00570 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX1O00570 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX1O00570 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX1O00570 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SOX1O00570 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SOX1O00570 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.41■□□□□ 0.22
SOX1O00570 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX1O00570 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SOX1O00570 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX1O00570 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX1O00570 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SOX1O00570 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.4■□□□□ 0.22
SOX1O00570 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SOX1O00570 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.4■□□□□ 0.22
SOX1O00570 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX1O00570 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.4■□□□□ 0.22
SOX1O00570 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
SOX1O00570 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX1O00570 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SOX1O00570 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC16.4■□□□□ 0.22
SOX1O00570 AL357563.1-201ENST00000404728 395 ntBASIC16.4■□□□□ 0.22
SOX1O00570 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC16.4■□□□□ 0.22
SOX1O00570 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SOX1O00570 RN7SL258P-201ENST00000478664 300 ntBASIC16.4■□□□□ 0.22
SOX1O00570 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC16.4■□□□□ 0.22
SOX1O00570 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC16.4■□□□□ 0.22
SOX1O00570 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC16.4■□□□□ 0.22
SOX1O00570 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC16.4■□□□□ 0.22
SOX1O00570 AC009779.1-201ENST00000551138 283 ntBASIC16.4■□□□□ 0.22
SOX1O00570 AC107464.3-201ENST00000609172 737 ntBASIC16.4■□□□□ 0.22
SOX1O00570 AL627230.2-201ENST00000613254 655 ntBASIC16.4■□□□□ 0.22
SOX1O00570 PTPN20CP-201ENST00000614090 920 ntBASIC16.4■□□□□ 0.22
SOX1O00570 DDX5-235ENST00000630471 473 ntTSL 4 BASIC16.4■□□□□ 0.22
SOX1O00570 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
SOX1O00570 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SOX1O00570 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SOX1O00570 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SOX1O00570 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
SOX1O00570 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
SOX1O00570 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC16.4■□□□□ 0.22
SOX1O00570 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX1O00570 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.4■□□□□ 0.22
SOX1O00570 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX1O00570 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX1O00570 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX1O00570 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX1O00570 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX1O00570 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SOX1O00570 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.39■□□□□ 0.21
SOX1O00570 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SOX1O00570 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX1O00570 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX1O00570 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX1O00570 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX1O00570 BAK1P1-201ENST00000317045 636 ntBASIC16.39■□□□□ 0.21
SOX1O00570 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX1O00570 COX20P1-201ENST00000366529 357 ntBASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms