Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC8.68□□□□□ -1.02
CHKB-CPT1BH3BT56 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC8.68□□□□□ -1.02
CHKB-CPT1BH3BT56 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
CHKB-CPT1BH3BT56 NLRP1-208ENST00000571451 5444 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
CHKB-CPT1BH3BT56 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC8.68□□□□□ -1.02
CHKB-CPT1BH3BT56 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
CHKB-CPT1BH3BT56 AMT-250ENST00000637682 1823 ntTSL 5 BASIC8.68□□□□□ -1.02
CHKB-CPT1BH3BT56 PLEC-205ENST00000356346 14683 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
CHKB-CPT1BH3BT56 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC8.68□□□□□ -1.02
CHKB-CPT1BH3BT56 DKFZP434H168-201ENST00000567381 1905 ntBASIC8.68□□□□□ -1.02
CHKB-CPT1BH3BT56 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
CHKB-CPT1BH3BT56 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC8.68□□□□□ -1.02
CHKB-CPT1BH3BT56 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
CHKB-CPT1BH3BT56 INTS8-217ENST00000523731 4633 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
CHKB-CPT1BH3BT56 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 LRFN3-204ENST00000588831 3689 ntAPPRIS P1 TSL 5 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 LENG8-201ENST00000326764 3991 ntAPPRIS P2 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 RAP1A-202ENST00000369709 5024 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 OPHN1-201ENST00000355520 7879 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 CDC14C-201ENST00000428251 1719 ntBASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 MROH4P-201ENST00000431302 1578 ntBASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 TCAF2-205ENST00000444908 2976 ntTSL 5 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 AC091390.4-202ENST00000476426 537 ntBASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 AC002558.1-201ENST00000488906 803 ntBASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 GABRB3-204ENST00000541819 5934 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 AC137761.2-201ENST00000561729 223 ntBASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 AC145350.3-201ENST00000569033 163 ntBASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 AC008622.2-201ENST00000617006 1229 ntBASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 AC134407.3-201ENST00000624035 2139 ntBASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 AP000997.2-201ENST00000564619 8400 ntBASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 OR4D9-203ENST00000641962 6123 ntAPPRIS P1 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 ZNF747-201ENST00000252799 3936 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC8.67□□□□□ -1.02
CHKB-CPT1BH3BT56 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 SLC38A7-201ENST00000219320 4392 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 JADE1-213ENST00000610919 5644 ntAPPRIS P3 TSL 5 BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 LRRC55-201ENST00000497933 5410 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 SYNJ1-202ENST00000382491 6958 ntTSL 5 BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 NLRP1-201ENST00000262467 5131 ntTSL 5 BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
CHKB-CPT1BH3BT56 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC8.66□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms