RNA–Protein interactions for RNA: ENST00000541819.6

GABRB3-204, Transcript of gamma-aminobutyric acid type A receptor beta3 subunit, humanhuman

TSL 1 (best) BASIC

Gene GABRB3, Length 5,934 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRB3-204ENST00000541819 DCAF8L2P0C7V8 631 aa18.32■□□□□ 0.52
GABRB3-204ENST00000541819 PELP1Q8IZL8 1130 aaKnown RBP17.37■□□□□ 0.37
GABRB3-204ENST00000541819 SUPT5HO00267 1087 aaKnown RBP17.18■□□□□ 0.34
GABRB3-204ENST00000541819 EHMT2Q96KQ7 1210 aa16.94■□□□□ 0.3
GABRB3-204ENST00000541819 APLP2Q06481 763 aa16.92■□□□□ 0.3
GABRB3-204ENST00000541819 FAM9AQ8IZU1 332 aaPredicted RBP16.89■□□□□ 0.29
GABRB3-204ENST00000541819 SHROOM4Q9ULL8 1493 aa16.68■□□□□ 0.26
GABRB3-204ENST00000541819 ERICH6Q7L0X2 663 aa16.68■□□□□ 0.26
GABRB3-204ENST00000541819 CCER1Q8TC90 406 aaPredicted RBP16.6■□□□□ 0.25
GABRB3-204ENST00000541819 TTBK1Q5TCY1 1321 aaPredicted RBP16.4■□□□□ 0.22
GABRB3-204ENST00000541819 CENPBP07199 599 aaPredicted RBP16.32■□□□□ 0.2
GABRB3-204ENST00000541819 ATP1B4Q9UN42 357 aaPredicted RBP16.26■□□□□ 0.19
GABRB3-204ENST00000541819 RANGAP1P46060 587 aaPredicted RBP16.24■□□□□ 0.19
GABRB3-204ENST00000541819 PCGF6Q9BYE7 350 aa16.23■□□□□ 0.19
GABRB3-204ENST00000541819 NISCHQ9Y2I1 1504 aa16.2■□□□□ 0.18
GABRB3-204ENST00000541819 NEFLP07196 543 aa16.18■□□□□ 0.18
GABRB3-204ENST00000541819 ZEB1P37275 1124 aaPredicted RBP16.1■□□□□ 0.17
GABRB3-204ENST00000541819 DAXXQ9UER7 740 aaPredicted RBP15.94■□□□□ 0.14
GABRB3-204ENST00000541819 UBTFP17480 764 aaKnown RBP15.92■□□□□ 0.14
GABRB3-204ENST00000541819 TRIM41Q8WV44 630 aa15.92■□□□□ 0.14
GABRB3-204ENST00000541819 YTHDC1Q96MU7 727 aaKnown RBP15.88■□□□□ 0.13
GABRB3-204ENST00000541819 MYT1Q01538 1121 aa15.88■□□□□ 0.13
GABRB3-204ENST00000541819 MYT1LQ9UL68 1186 aa15.87■□□□□ 0.13
GABRB3-204ENST00000541819 POLR3GLQ9BT43 218 aa15.72■□□□□ 0.11
GABRB3-204ENST00000541819 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.67■□□□□ 0.1
GABRB3-204ENST00000541819 HNRNPUL2Q1KMD3 747 aaKnown RBP15.67■□□□□ 0.1
GABRB3-204ENST00000541819 SLC4A1APQ9BWU0 796 aaKnown RBP15.58■□□□□ 0.08
GABRB3-204ENST00000541819 CHIC1Q5VXU3 224 aa15.54■□□□□ 0.08
GABRB3-204ENST00000541819 ZNF316A6NFI3 1004 aaPredicted RBP15.52■□□□□ 0.07
GABRB3-204ENST00000541819 ITGAEP38570 1179 aa15.51■□□□□ 0.07
GABRB3-204ENST00000541819 PPARGC1BQ86YN6 1023 aaKnown RBP15.48■□□□□ 0.07
GABRB3-204ENST00000541819 CLSPNQ9HAW4 1339 aa15.47■□□□□ 0.07
GABRB3-204ENST00000541819 CNGB1Q14028 1251 aaPredicted RBP15.47■□□□□ 0.07
GABRB3-204ENST00000541819 RTL5Q5HYW3 569 aaPredicted RBP15.42■□□□□ 0.06
GABRB3-204ENST00000541819 TRIM26Q12899 539 aaPredicted RBP15.33■□□□□ 0.05
GABRB3-204ENST00000541819 ZBTB47Q9UFB7 747 aaPredicted RBP15.27■□□□□ 0.04
GABRB3-204ENST00000541819 HRCP23327 699 aa15.18■□□□□ 0.02
GABRB3-204ENST00000541819 SLC24A1O60721 1099 aa15.13■□□□□ 0.01
GABRB3-204ENST00000541819 TRIM52Q96A61 297 aa15.12■□□□□ 0.01
GABRB3-204ENST00000541819 FAM50AQ14320 339 aaKnown RBP15.09■□□□□ 0.01
GABRB3-204ENST00000541819 CANXP27824 592 aaKnown RBP15.04■□□□□ -0
GABRB3-204ENST00000541819 NEFMP07197 916 aa15.04■□□□□ -0
GABRB3-204ENST00000541819 BCANQ96GW7 911 aa15□□□□□ -0.01
GABRB3-204ENST00000541819 BCL11AQ9H165 835 aa14.99□□□□□ -0.01
GABRB3-204ENST00000541819 ZNF326Q5BKZ1 582 aaKnown RBP14.98□□□□□ -0.01
GABRB3-204ENST00000541819 NEUROD1Q13562 356 aa14.95□□□□□ -0.02
GABRB3-204ENST00000541819 DIEXFQ68CQ4 756 aaKnown RBP14.95□□□□□ -0.02
GABRB3-204ENST00000541819 CDK11AQ9UQ88 783 aaPredicted RBP14.95□□□□□ -0.02
GABRB3-204ENST00000541819 ANP32CO43423 234 aa14.93□□□□□ -0.02
GABRB3-204ENST00000541819 LOC105371045A0A1W2PR82 267 aa14.87□□□□□ -0.03
GABRB3-204ENST00000541819 FBLN2P98095 1184 aa14.81□□□□□ -0.04
GABRB3-204ENST00000541819 ANP32BQ92688 251 aaKnown RBP14.8□□□□□ -0.04
GABRB3-204ENST00000541819 ANP32AP39687 249 aaKnown RBP14.76□□□□□ -0.05
GABRB3-204ENST00000541819 ESF1Q9H501 851 aaKnown RBP14.76□□□□□ -0.05
GABRB3-204ENST00000541819 HSP90AA1P07900 732 aaKnown RBP14.71□□□□□ -0.05
GABRB3-204ENST00000541819 NPM2Q86SE8 214 aaKnown RBP14.67□□□□□ -0.06
GABRB3-204ENST00000541819 STAG3Q9UJ98 1225 aa14.66□□□□□ -0.06
GABRB3-204ENST00000541819 UPF2Q9HAU5 1272 aaKnown RBP14.64□□□□□ -0.07
GABRB3-204ENST00000541819 GTF3C3Q9Y5Q9 886 aa14.62□□□□□ -0.07
GABRB3-204ENST00000541819 CDK11BP21127 795 aaKnown RBP14.61□□□□□ -0.07
GABRB3-204ENST00000541819 ZNF777Q9ULD5 760 aaPredicted RBP14.6□□□□□ -0.07
GABRB3-204ENST00000541819 PLPPR3Q6T4P5 718 aa14.58□□□□□ -0.08
GABRB3-204ENST00000541819 ARID3CA6NKF2 412 aa14.57□□□□□ -0.08
GABRB3-204ENST00000541819 CHGAP10645 457 aaKnown RBP14.57□□□□□ -0.08
GABRB3-204ENST00000541819 PABPN1Q86U42 306 aaKnown RBP eCLIP14.55□□□□□ -0.08
GABRB3-204ENST00000541819 EIF5BO60841 1220 aaKnown RBP14.55□□□□□ -0.08
GABRB3-204ENST00000541819 GLIPR1L2Q4G1C9 344 aa14.5□□□□□ -0.09
GABRB3-204ENST00000541819 P3H3Q8IVL6 736 aa14.49□□□□□ -0.09
GABRB3-204ENST00000541819 NPM1P06748 294 aaKnown RBP eCLIP14.47□□□□□ -0.09
GABRB3-204ENST00000541819 SCAF1Q9H7N4 1312 aaKnown RBP14.47□□□□□ -0.09
GABRB3-204ENST00000541819 A0A0G2JS52 829 aa14.44□□□□□ -0.1
GABRB3-204ENST00000541819 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.44□□□□□ -0.1
GABRB3-204ENST00000541819 MYH16Q9H6N6 1097 aa14.4□□□□□ -0.1
GABRB3-204ENST00000541819 TONSLQ96HA7 1378 aa14.39□□□□□ -0.11
GABRB3-204ENST00000541819 WDR43Q15061 677 aaKnown RBP eCLIP14.37□□□□□ -0.11
GABRB3-204ENST00000541819 ABCC9O60706 1549 aa14.36□□□□□ -0.11
GABRB3-204ENST00000541819 FKBP8Q14318 412 aa14.35□□□□□ -0.11
GABRB3-204ENST00000541819 FAM9BQ8IZU0 186 aa14.34□□□□□ -0.11
GABRB3-204ENST00000541819 HNRNPUQ00839 825 aaKnown RBP eCLIP14.34□□□□□ -0.11
GABRB3-204ENST00000541819 SALL2Q9Y467 1007 aaPredicted RBP14.33□□□□□ -0.12
GABRB3-204ENST00000541819 ARXQ96QS3 562 aa14.33□□□□□ -0.12
GABRB3-204ENST00000541819 ZBTB7CA1YPR0 619 aa14.32□□□□□ -0.12
GABRB3-204ENST00000541819 NCLP19338 710 aaKnown RBP14.31□□□□□ -0.12
GABRB3-204ENST00000541819 TMC1Q8TDI8 760 aa14.3□□□□□ -0.12
GABRB3-204ENST00000541819 CCDC136Q96JN2 1154 aa14.3□□□□□ -0.12
GABRB3-204ENST00000541819 ACIN1Q9UKV3 1341 aaKnown RBP14.3□□□□□ -0.12
GABRB3-204ENST00000541819 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.3□□□□□ -0.12
GABRB3-204ENST00000541819 C14orf37Q86TY3 774 aa14.26□□□□□ -0.13
GABRB3-204ENST00000541819 NBR1Q14596 966 aa14.23□□□□□ -0.13
GABRB3-204ENST00000541819 ZRSR1Q15695 479 aaKnown RBP14.23□□□□□ -0.13
GABRB3-204ENST00000541819 CSRNP3Q8WYN3 585 aa14.23□□□□□ -0.13
GABRB3-204ENST00000541819 HAP1P54257 671 aaPredicted RBP14.22□□□□□ -0.13
GABRB3-204ENST00000541819 PLEKHG5O94827 1062 aa14.21□□□□□ -0.14
GABRB3-204ENST00000541819 PPP1R15AO75807 674 aaPredicted RBP14.2□□□□□ -0.14
GABRB3-204ENST00000541819 TULP1O00294 542 aaPredicted RBP14.19□□□□□ -0.14
GABRB3-204ENST00000541819 GOLGA6L22H0YM25 854 aa14.19□□□□□ -0.14
GABRB3-204ENST00000541819 BECN1Q14457 450 aa14.19□□□□□ -0.14
GABRB3-204ENST00000541819 DDX10Q13206 875 aaKnown RBP14.18□□□□□ -0.14
GABRB3-204ENST00000541819 TRIM44Q96DX7 344 aaPredicted RBP14.18□□□□□ -0.14
GABRB3-204ENST00000541819 TSPY4P0CV99 314 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms