RNA–Protein interactions for RNA: ENST00000588831.5

LRFN3-204, Transcript of leucine rich repeat and fibronectin type III domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LRFN3, Length 3,689 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3-204ENST00000588831 NISCHQ9Y2I1 1504 aa22.86■■□□□ 1.25
LRFN3-204ENST00000588831 SHROOM4Q9ULL8 1493 aa21.15■□□□□ 0.98
LRFN3-204ENST00000588831 SUPT5HO00267 1087 aaKnown RBP20.97■□□□□ 0.95
LRFN3-204ENST00000588831 DCAF8L2P0C7V8 631 aa20.79■□□□□ 0.92
LRFN3-204ENST00000588831 PELP1Q8IZL8 1130 aaKnown RBP20.39■□□□□ 0.85
LRFN3-204ENST00000588831 PCGF6Q9BYE7 350 aa20.2■□□□□ 0.82
LRFN3-204ENST00000588831 PPARGC1BQ86YN6 1023 aaKnown RBP20.07■□□□□ 0.8
LRFN3-204ENST00000588831 EHMT2Q96KQ7 1210 aa19.98■□□□□ 0.79
LRFN3-204ENST00000588831 CHIC1Q5VXU3 224 aa19.86■□□□□ 0.77
LRFN3-204ENST00000588831 LOC105371045A0A1W2PR82 267 aa19.84■□□□□ 0.77
LRFN3-204ENST00000588831 HRCP23327 699 aa19.83■□□□□ 0.77
LRFN3-204ENST00000588831 MYT1Q01538 1121 aa19.82■□□□□ 0.76
LRFN3-204ENST00000588831 MYO15BQ96JP2 1530 aa19.74■□□□□ 0.75
LRFN3-204ENST00000588831 FAM9AQ8IZU1 332 aaPredicted RBP19.62■□□□□ 0.73
LRFN3-204ENST00000588831 TTBK1Q5TCY1 1321 aaPredicted RBP19.31■□□□□ 0.68
LRFN3-204ENST00000588831 SCAF1Q9H7N4 1312 aaKnown RBP19.23■□□□□ 0.67
LRFN3-204ENST00000588831 ZCCHC6Q5VYS8 1495 aaKnown RBP19.17■□□□□ 0.66
LRFN3-204ENST00000588831 TRIM26Q12899 539 aaPredicted RBP19.13■□□□□ 0.65
LRFN3-204ENST00000588831 TRIM41Q8WV44 630 aa19.11■□□□□ 0.65
LRFN3-204ENST00000588831 CCDC180Q9P1Z9 1646 aa18.91■□□□□ 0.62
LRFN3-204ENST00000588831 GTF3C3Q9Y5Q9 886 aa18.91■□□□□ 0.62
LRFN3-204ENST00000588831 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.88■□□□□ 0.61
LRFN3-204ENST00000588831 CENPBP07199 599 aaPredicted RBP18.84■□□□□ 0.61
LRFN3-204ENST00000588831 YTHDC1Q96MU7 727 aaKnown RBP18.84■□□□□ 0.61
LRFN3-204ENST00000588831 ABCC9O60706 1549 aa18.81■□□□□ 0.6
LRFN3-204ENST00000588831 CCER1Q8TC90 406 aaPredicted RBP18.77■□□□□ 0.6
LRFN3-204ENST00000588831 DCAF1Q9Y4B6 1507 aa18.75■□□□□ 0.59
LRFN3-204ENST00000588831 BCL11AQ9H165 835 aa18.67■□□□□ 0.58
LRFN3-204ENST00000588831 ZEB1P37275 1124 aaPredicted RBP18.64■□□□□ 0.58
LRFN3-204ENST00000588831 RANGAP1P46060 587 aaPredicted RBP18.63■□□□□ 0.57
LRFN3-204ENST00000588831 NEUROD1Q13562 356 aa18.63■□□□□ 0.57
LRFN3-204ENST00000588831 ACIN1Q9UKV3 1341 aaKnown RBP18.62■□□□□ 0.57
LRFN3-204ENST00000588831 SCRIBQ14160 1630 aa18.55■□□□□ 0.56
LRFN3-204ENST00000588831 RSF1Q96T23 1441 aaPredicted RBP18.41■□□□□ 0.54
LRFN3-204ENST00000588831 DIEXFQ68CQ4 756 aaKnown RBP18.4■□□□□ 0.54
LRFN3-204ENST00000588831 UBTFP17480 764 aaKnown RBP18.39■□□□□ 0.53
LRFN3-204ENST00000588831 PABPN1Q86U42 306 aaKnown RBP eCLIP18.38■□□□□ 0.53
LRFN3-204ENST00000588831 HNRNPUL2Q1KMD3 747 aaKnown RBP18.34■□□□□ 0.53
LRFN3-204ENST00000588831 PRKCSHP14314 528 aaPredicted RBP18.33■□□□□ 0.53
LRFN3-204ENST00000588831 RB1CC1Q8TDY2 1594 aa18.32■□□□□ 0.52
LRFN3-204ENST00000588831 CECR2Q9BXF3 1484 aa18.22■□□□□ 0.51
LRFN3-204ENST00000588831 ERICH6Q7L0X2 663 aa18.18■□□□□ 0.5
LRFN3-204ENST00000588831 ANP32EQ9BTT0 268 aa18.03■□□□□ 0.48
LRFN3-204ENST00000588831 MIER1Q8N108 512 aa18.01■□□□□ 0.47
LRFN3-204ENST00000588831 CSRNP3Q8WYN3 585 aa18■□□□□ 0.47
LRFN3-204ENST00000588831 MROH2BQ7Z745 1585 aa17.99■□□□□ 0.47
LRFN3-204ENST00000588831 BCANQ96GW7 911 aa17.99■□□□□ 0.47
LRFN3-204ENST00000588831 ITGAEP38570 1179 aa17.98■□□□□ 0.47
LRFN3-204ENST00000588831 APLP2Q06481 763 aa17.98■□□□□ 0.47
LRFN3-204ENST00000588831 ZNF316A6NFI3 1004 aaPredicted RBP17.96■□□□□ 0.47
LRFN3-204ENST00000588831 ABCC8Q09428 1581 aa17.93■□□□□ 0.46
LRFN3-204ENST00000588831 WIZO95785 1651 aa17.92■□□□□ 0.46
LRFN3-204ENST00000588831 SOGA1O94964 1423 aa17.9■□□□□ 0.46
LRFN3-204ENST00000588831 NACADO15069 1562 aa17.87■□□□□ 0.45
LRFN3-204ENST00000588831 CCDC88BA6NC98 1476 aa17.86■□□□□ 0.45
LRFN3-204ENST00000588831 CEP162Q5TB80 1403 aa17.84■□□□□ 0.45
LRFN3-204ENST00000588831 RUSC2Q8N2Y8 1516 aa17.81■□□□□ 0.44
LRFN3-204ENST00000588831 ATP1B4Q9UN42 357 aaPredicted RBP17.7■□□□□ 0.42
LRFN3-204ENST00000588831 EIF5BO60841 1220 aaKnown RBP17.65■□□□□ 0.42
LRFN3-204ENST00000588831 CCDC136Q96JN2 1154 aa17.65■□□□□ 0.42
LRFN3-204ENST00000588831 HIRIP3Q9BW71 556 aaPredicted RBP17.6■□□□□ 0.41
LRFN3-204ENST00000588831 BAZ1AQ9NRL2 1556 aaPredicted RBP17.58■□□□□ 0.41
LRFN3-204ENST00000588831 ANO8Q9HCE9 1232 aaPredicted RBP17.58■□□□□ 0.41
LRFN3-204ENST00000588831 NEFLP07196 543 aa17.56■□□□□ 0.4
LRFN3-204ENST00000588831 RTN4Q9NQC3 1192 aaKnown RBP17.55■□□□□ 0.4
LRFN3-204ENST00000588831 KCNH8Q96L42 1107 aa17.54■□□□□ 0.4
LRFN3-204ENST00000588831 TNIKQ9UKE5 1360 aa17.54■□□□□ 0.4
LRFN3-204ENST00000588831 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.5■□□□□ 0.39
LRFN3-204ENST00000588831 CLIP1P30622 1438 aa17.49■□□□□ 0.39
LRFN3-204ENST00000588831 TSHZ2Q9NRE2 1034 aa17.48■□□□□ 0.39
LRFN3-204ENST00000588831 KANK4Q5T7N3 995 aaPredicted RBP17.46■□□□□ 0.39
LRFN3-204ENST00000588831 P3H3Q8IVL6 736 aa17.46■□□□□ 0.39
LRFN3-204ENST00000588831 NBR1Q14596 966 aa17.43■□□□□ 0.38
LRFN3-204ENST00000588831 CNGB1Q14028 1251 aaPredicted RBP17.41■□□□□ 0.38
LRFN3-204ENST00000588831 SUPT16HQ9Y5B9 1047 aaKnown RBP17.41■□□□□ 0.38
LRFN3-204ENST00000588831 GOLGA3Q08378 1498 aa17.41■□□□□ 0.38
LRFN3-204ENST00000588831 WRNQ14191 1432 aaPredicted RBP eCLIP17.41■□□□□ 0.38
LRFN3-204ENST00000588831 DDX10Q13206 875 aaKnown RBP17.4■□□□□ 0.38
LRFN3-204ENST00000588831 FAM50AQ14320 339 aaKnown RBP17.39■□□□□ 0.37
LRFN3-204ENST00000588831 TRIM52Q96A61 297 aa17.36■□□□□ 0.37
LRFN3-204ENST00000588831 FKBP8Q14318 412 aa17.36■□□□□ 0.37
LRFN3-204ENST00000588831 SMARCA4P51532 1647 aa17.33■□□□□ 0.36
LRFN3-204ENST00000588831 SIN3AQ96ST3 1273 aa17.32■□□□□ 0.36
LRFN3-204ENST00000588831 TOP2AP11388 1531 aaKnown RBP17.31■□□□□ 0.36
LRFN3-204ENST00000588831 RAPGEF2Q9Y4G8 1499 aa17.31■□□□□ 0.36
LRFN3-204ENST00000588831 SMARCA2P51531 1590 aa17.3■□□□□ 0.36
LRFN3-204ENST00000588831 RTL5Q5HYW3 569 aaPredicted RBP17.29■□□□□ 0.36
LRFN3-204ENST00000588831 BAZ1BQ9UIG0 1483 aaKnown RBP17.29■□□□□ 0.36
LRFN3-204ENST00000588831 DEKP35659 375 aaKnown RBP17.27■□□□□ 0.36
LRFN3-204ENST00000588831 IRX6P78412 446 aaPredicted RBP17.27■□□□□ 0.35
LRFN3-204ENST00000588831 SALL2Q9Y467 1007 aaPredicted RBP17.25■□□□□ 0.35
LRFN3-204ENST00000588831 VPS8Q8N3P4 1428 aa17.21■□□□□ 0.35
LRFN3-204ENST00000588831 SENP3-EIF4A1A0A087X0R7 540 aa17.21■□□□□ 0.35
LRFN3-204ENST00000588831 CEP164Q9UPV0 1460 aa17.21■□□□□ 0.35
LRFN3-204ENST00000588831 RBM19Q9Y4C8 960 aaKnown RBP17.2■□□□□ 0.34
LRFN3-204ENST00000588831 DHX57Q6P158 1386 aaKnown RBP17.18■□□□□ 0.34
LRFN3-204ENST00000588831 EEA1Q15075 1411 aa17.17■□□□□ 0.34
LRFN3-204ENST00000588831 EIF4G1Q04637 1599 aaKnown RBP17.15■□□□□ 0.34
LRFN3-204ENST00000588831 ARID3CA6NKF2 412 aa17.14■□□□□ 0.33
LRFN3-204ENST00000588831 ATAD2BQ9ULI0 1458 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms