Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RAB35-202ENST00000534951 939 ntTSL 2 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 AC009407.1-201ENST00000568958 598 ntBASIC12.15□□□□□ -0.46
CCDC140Q96MF4 TEX48-202ENST00000612244 662 ntTSL 3 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 5S_rRNA.22-201ENST00000614916 106 ntBASIC12.15□□□□□ -0.46
CCDC140Q96MF4 AC004461.2-201ENST00000629517 803 ntBASIC12.15□□□□□ -0.46
CCDC140Q96MF4 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC12.15□□□□□ -0.47
CCDC140Q96MF4 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC12.15□□□□□ -0.47
CCDC140Q96MF4 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.47
CCDC140Q96MF4 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 NME2-201ENST00000393183 568 ntTSL 2 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 BASP1P1-201ENST00000430708 665 ntBASIC12.14□□□□□ -0.47
CCDC140Q96MF4 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 AC114501.2-201ENST00000439631 535 ntBASIC12.14□□□□□ -0.47
CCDC140Q96MF4 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 STOM-203ENST00000538954 1257 ntTSL 5 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 AC008738.7-201ENST00000609744 511 ntBASIC12.14□□□□□ -0.47
CCDC140Q96MF4 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 MYB-242ENST00000618728 3545 ntTSL 5 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 BTBD7P1-201ENST00000447253 1453 ntBASIC12.14□□□□□ -0.47
CCDC140Q96MF4 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CCDC140Q96MF4 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 AC084364.1-201ENST00000551967 1556 ntBASIC12.13□□□□□ -0.47
CCDC140Q96MF4 AC022144.1-201ENST00000602255 1580 ntBASIC12.13□□□□□ -0.47
CCDC140Q96MF4 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms