Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 PGR-209ENST00000617858 2816 ntTSL 5 BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 MIR4750-201ENST00000584564 56 ntBASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT28Q7Z3Y7 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 LY6E-208ENST00000520531 490 ntTSL 2 BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 CENPX-208ENST00000584347 799 ntTSL 2 BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 AC004899.1-201ENST00000424687 1714 ntBASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
KRT28Q7Z3Y7 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 CLUHP2-201ENST00000426660 1303 ntBASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 MIR4783-201ENST00000580343 82 ntBASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 AC004466.1-201ENST00000599515 1080 ntBASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 AL353770.1-201ENST00000614915 403 ntBASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 AC138466.3-201ENST00000619983 221 ntBASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 AC068587.8-201ENST00000641239 219 ntBASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
KRT28Q7Z3Y7 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT28Q7Z3Y7 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT28Q7Z3Y7 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
KRT28Q7Z3Y7 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC20.84■□□□□ 0.93
KRT28Q7Z3Y7 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
KRT28Q7Z3Y7 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
KRT28Q7Z3Y7 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC20.84■□□□□ 0.93
KRT28Q7Z3Y7 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
KRT28Q7Z3Y7 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT28Q7Z3Y7 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC20.84■□□□□ 0.93
KRT28Q7Z3Y7 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC20.84■□□□□ 0.93
KRT28Q7Z3Y7 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms