Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.91■□□□□ 0.46
ATL3Q6DD88 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC17.91■□□□□ 0.46
ATL3Q6DD88 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.91■□□□□ 0.46
ATL3Q6DD88 AC093520.2-201ENST00000561830 333 ntBASIC17.91■□□□□ 0.46
ATL3Q6DD88 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.91■□□□□ 0.46
ATL3Q6DD88 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.91■□□□□ 0.46
ATL3Q6DD88 AC003101.2-201ENST00000612557 442 ntBASIC17.91■□□□□ 0.46
ATL3Q6DD88 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ATL3Q6DD88 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATL3Q6DD88 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC17.91■□□□□ 0.46
ATL3Q6DD88 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
ATL3Q6DD88 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATL3Q6DD88 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATL3Q6DD88 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATL3Q6DD88 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATL3Q6DD88 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATL3Q6DD88 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ATL3Q6DD88 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ATL3Q6DD88 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ATL3Q6DD88 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ATL3Q6DD88 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC17.91■□□□□ 0.46
ATL3Q6DD88 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATL3Q6DD88 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
ATL3Q6DD88 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ATL3Q6DD88 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
ATL3Q6DD88 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATL3Q6DD88 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC17.9■□□□□ 0.46
ATL3Q6DD88 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC17.9■□□□□ 0.46
ATL3Q6DD88 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATL3Q6DD88 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATL3Q6DD88 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC17.9■□□□□ 0.46
ATL3Q6DD88 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATL3Q6DD88 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATL3Q6DD88 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.9■□□□□ 0.46
ATL3Q6DD88 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.9■□□□□ 0.46
ATL3Q6DD88 SPDYE14P-201ENST00000442619 822 ntBASIC17.9■□□□□ 0.46
ATL3Q6DD88 USP40-206ENST00000443711 628 ntTSL 2 BASIC17.9■□□□□ 0.46
ATL3Q6DD88 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATL3Q6DD88 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ATL3Q6DD88 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATL3Q6DD88 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC17.9■□□□□ 0.46
ATL3Q6DD88 AC015910.1-201ENST00000579400 975 ntBASIC17.9■□□□□ 0.46
ATL3Q6DD88 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.9■□□□□ 0.46
ATL3Q6DD88 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATL3Q6DD88 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC17.9■□□□□ 0.46
ATL3Q6DD88 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
ATL3Q6DD88 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC17.9■□□□□ 0.46
ATL3Q6DD88 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATL3Q6DD88 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.9■□□□□ 0.46
ATL3Q6DD88 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATL3Q6DD88 Z97205.2-201ENST00000564697 1639 ntBASIC17.9■□□□□ 0.46
ATL3Q6DD88 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATL3Q6DD88 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATL3Q6DD88 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.9■□□□□ 0.46
ATL3Q6DD88 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATL3Q6DD88 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ATL3Q6DD88 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.9■□□□□ 0.46
ATL3Q6DD88 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
ATL3Q6DD88 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
ATL3Q6DD88 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATL3Q6DD88 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATL3Q6DD88 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC17.89■□□□□ 0.45
ATL3Q6DD88 AC232323.1-201ENST00000540724 2099 ntBASIC17.89■□□□□ 0.45
ATL3Q6DD88 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
ATL3Q6DD88 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ATL3Q6DD88 REXO1L5P-201ENST00000622260 2098 ntBASIC17.89■□□□□ 0.45
ATL3Q6DD88 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATL3Q6DD88 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
ATL3Q6DD88 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATL3Q6DD88 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
ATL3Q6DD88 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATL3Q6DD88 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.89■□□□□ 0.45
ATL3Q6DD88 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
ATL3Q6DD88 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.89■□□□□ 0.45
ATL3Q6DD88 RBPMS2P1-201ENST00000437762 623 ntBASIC17.89■□□□□ 0.45
ATL3Q6DD88 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.89■□□□□ 0.45
ATL3Q6DD88 SLED1-202ENST00000512051 380 ntBASIC17.89■□□□□ 0.45
ATL3Q6DD88 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.89■□□□□ 0.45
ATL3Q6DD88 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.89■□□□□ 0.45
ATL3Q6DD88 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ATL3Q6DD88 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.89■□□□□ 0.45
ATL3Q6DD88 MIR6069-201ENST00000620069 79 ntBASIC17.89■□□□□ 0.45
ATL3Q6DD88 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.89■□□□□ 0.45
ATL3Q6DD88 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.89■□□□□ 0.45
ATL3Q6DD88 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC17.89■□□□□ 0.45
ATL3Q6DD88 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATL3Q6DD88 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
ATL3Q6DD88 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATL3Q6DD88 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATL3Q6DD88 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ATL3Q6DD88 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATL3Q6DD88 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
ATL3Q6DD88 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATL3Q6DD88 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATL3Q6DD88 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATL3Q6DD88 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
ATL3Q6DD88 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
ATL3Q6DD88 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC17.88■□□□□ 0.45
ATL3Q6DD88 AC106881.1-201ENST00000605849 3329 ntBASIC17.88■□□□□ 0.45
ATL3Q6DD88 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms