Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
TFF3Q07654 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
TFF3Q07654 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
TFF3Q07654 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TFF3Q07654 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC13.79□□□□□ -0.2
TFF3Q07654 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
TFF3Q07654 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC13.79□□□□□ -0.2
TFF3Q07654 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TFF3Q07654 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TFF3Q07654 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC13.79□□□□□ -0.2
TFF3Q07654 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
TFF3Q07654 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
TFF3Q07654 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC13.78□□□□□ -0.2
TFF3Q07654 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC13.78□□□□□ -0.2
TFF3Q07654 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 CYP2T1P-202ENST00000641596 2535 ntBASIC13.78□□□□□ -0.2
TFF3Q07654 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 AC026954.1-201ENST00000429771 1293 ntBASIC13.78□□□□□ -0.2
TFF3Q07654 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC13.78□□□□□ -0.2
TFF3Q07654 PFN1P12-201ENST00000455938 534 ntBASIC13.78□□□□□ -0.2
TFF3Q07654 PHKG1P2-201ENST00000457537 863 ntBASIC13.78□□□□□ -0.2
TFF3Q07654 AC093433.1-201ENST00000458048 571 ntBASIC13.78□□□□□ -0.2
TFF3Q07654 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.78□□□□□ -0.2
TFF3Q07654 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC13.78□□□□□ -0.2
TFF3Q07654 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 HNRNPUP1-201ENST00000554987 333 ntBASIC13.78□□□□□ -0.2
TFF3Q07654 EMC4-209ENST00000559421 497 ntTSL 2 BASIC13.78□□□□□ -0.2
TFF3Q07654 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC13.78□□□□□ -0.2
TFF3Q07654 DUX4L45-201ENST00000566406 1057 ntBASIC13.78□□□□□ -0.2
TFF3Q07654 GNRHR2-203ENST00000581100 1187 ntBASIC13.78□□□□□ -0.2
TFF3Q07654 AL139099.5-201ENST00000635274 300 ntBASIC13.78□□□□□ -0.2
TFF3Q07654 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.78□□□□□ -0.2
TFF3Q07654 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
TFF3Q07654 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
TFF3Q07654 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC13.78□□□□□ -0.2
TFF3Q07654 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC13.78□□□□□ -0.2
TFF3Q07654 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC13.78□□□□□ -0.2
TFF3Q07654 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
TFF3Q07654 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
TFF3Q07654 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
TFF3Q07654 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC13.78□□□□□ -0.2
TFF3Q07654 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC13.78□□□□□ -0.2
TFF3Q07654 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
TFF3Q07654 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC13.78□□□□□ -0.2
TFF3Q07654 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
TFF3Q07654 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
TFF3Q07654 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
TFF3Q07654 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
TFF3Q07654 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.77□□□□□ -0.2
TFF3Q07654 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
TFF3Q07654 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
TFF3Q07654 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
TFF3Q07654 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
TFF3Q07654 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
TFF3Q07654 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
TFF3Q07654 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC13.77□□□□□ -0.21
TFF3Q07654 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 AGER-206ENST00000375070 1463 ntTSL 5 BASIC13.77□□□□□ -0.21
TFF3Q07654 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.77□□□□□ -0.21
TFF3Q07654 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC13.77□□□□□ -0.21
TFF3Q07654 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC13.77□□□□□ -0.21
TFF3Q07654 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC13.77□□□□□ -0.21
TFF3Q07654 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
TFF3Q07654 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms