Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.82■□□□□ 0.28
CNTN3Q9P232 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CNTN3Q9P232 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.82■□□□□ 0.28
CNTN3Q9P232 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CNTN3Q9P232 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.82■□□□□ 0.28
CNTN3Q9P232 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.82■□□□□ 0.28
CNTN3Q9P232 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.82■□□□□ 0.28
CNTN3Q9P232 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.82■□□□□ 0.28
CNTN3Q9P232 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CNTN3Q9P232 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.82■□□□□ 0.28
CNTN3Q9P232 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.82■□□□□ 0.28
CNTN3Q9P232 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CNTN3Q9P232 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.82■□□□□ 0.28
CNTN3Q9P232 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CNTN3Q9P232 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.82■□□□□ 0.28
CNTN3Q9P232 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.82■□□□□ 0.28
CNTN3Q9P232 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CNTN3Q9P232 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CNTN3Q9P232 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 CLUHP6-201ENST00000580789 941 ntBASIC16.81■□□□□ 0.28
CNTN3Q9P232 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 AC093813.1-201ENST00000605066 256 ntBASIC16.81■□□□□ 0.28
CNTN3Q9P232 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.81■□□□□ 0.28
CNTN3Q9P232 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNTN3Q9P232 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNTN3Q9P232 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNTN3Q9P232 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CNTN3Q9P232 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNTN3Q9P232 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CNTN3Q9P232 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNTN3Q9P232 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.8■□□□□ 0.28
CNTN3Q9P232 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNTN3Q9P232 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNTN3Q9P232 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.8■□□□□ 0.28
CNTN3Q9P232 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CNTN3Q9P232 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CNTN3Q9P232 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.8■□□□□ 0.28
CNTN3Q9P232 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CNTN3Q9P232 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CNTN3Q9P232 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNTN3Q9P232 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CNTN3Q9P232 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNTN3Q9P232 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNTN3Q9P232 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.8■□□□□ 0.28
CNTN3Q9P232 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.8■□□□□ 0.28
CNTN3Q9P232 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.8■□□□□ 0.28
CNTN3Q9P232 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.8■□□□□ 0.28
CNTN3Q9P232 GPR53P-205ENST00000457298 1084 ntBASIC16.8■□□□□ 0.28
CNTN3Q9P232 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CNTN3Q9P232 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC16.8■□□□□ 0.28
CNTN3Q9P232 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.8■□□□□ 0.28
CNTN3Q9P232 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.8■□□□□ 0.28
CNTN3Q9P232 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.8■□□□□ 0.28
CNTN3Q9P232 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CNTN3Q9P232 AC025181.2-201ENST00000606994 802 ntBASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms