Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 AP002414.2-201ENST00000591780 3365 ntBASIC16.81■□□□□ 0.28
SIX2Q9NPC8 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 AC087499.5-201ENST00000452760 1342 ntBASIC16.81■□□□□ 0.28
SIX2Q9NPC8 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 ZBED1P1-201ENST00000502364 1930 ntBASIC16.81■□□□□ 0.28
SIX2Q9NPC8 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 TREML5P-201ENST00000421694 576 ntBASIC16.81■□□□□ 0.28
SIX2Q9NPC8 TSSK5P-201ENST00000423978 907 ntBASIC16.81■□□□□ 0.28
SIX2Q9NPC8 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 AC139530.3-201ENST00000620344 690 ntBASIC16.81■□□□□ 0.28
SIX2Q9NPC8 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 LINC02228-204ENST00000642115 2962 ntBASIC16.81■□□□□ 0.28
SIX2Q9NPC8 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 AL133267.1-201ENST00000398220 340 ntBASIC16.8■□□□□ 0.28
SIX2Q9NPC8 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 ZNF890P-202ENST00000530367 1156 ntBASIC16.8■□□□□ 0.28
SIX2Q9NPC8 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 AL158211.3-201ENST00000607385 239 ntBASIC16.8■□□□□ 0.28
SIX2Q9NPC8 AL590560.3-201ENST00000623350 461 ntBASIC16.8■□□□□ 0.28
SIX2Q9NPC8 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 AL121723.1-201ENST00000445194 1519 ntBASIC16.8■□□□□ 0.28
SIX2Q9NPC8 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.8■□□□□ 0.28
SIX2Q9NPC8 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 AC100757.3-201ENST00000622361 1406 ntBASIC16.79■□□□□ 0.28
SIX2Q9NPC8 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms