Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 AC105129.2-201ENST00000559536 390 ntBASIC15.16■□□□□ 0.02
COL28A1Q2UY09 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 CU634019.7-201ENST00000624153 1185 ntBASIC15.16■□□□□ 0.02
COL28A1Q2UY09 FP236241.2-201ENST00000624906 1185 ntBASIC15.16■□□□□ 0.02
COL28A1Q2UY09 ABBA01031663.1-201ENST00000635630 790 ntBASIC15.16■□□□□ 0.02
COL28A1Q2UY09 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 KRT8P22-201ENST00000562317 1415 ntBASIC15.16■□□□□ 0.02
COL28A1Q2UY09 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 GPAA1P2-202ENST00000606848 1787 ntBASIC15.16■□□□□ 0.02
COL28A1Q2UY09 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 AC105917.1-201ENST00000506637 2539 ntBASIC15.15■□□□□ 0.02
COL28A1Q2UY09 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 AC063926.3-201ENST00000624734 5658 ntBASIC15.15■□□□□ 0.02
COL28A1Q2UY09 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 AL162726.2-201ENST00000438986 1017 ntBASIC15.15■□□□□ 0.02
COL28A1Q2UY09 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 ACTG1P17-201ENST00000558391 1119 ntBASIC15.15■□□□□ 0.02
COL28A1Q2UY09 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 MIR6069-201ENST00000620069 79 ntBASIC15.15■□□□□ 0.02
COL28A1Q2UY09 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 AC128714.1-201ENST00000637035 887 ntBASIC15.15■□□□□ 0.02
COL28A1Q2UY09 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 GGT3P-204ENST00000453783 1664 ntBASIC15.15■□□□□ 0.02
COL28A1Q2UY09 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.15■□□□□ 0.02
COL28A1Q2UY09 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 ACTG1P3-201ENST00000431775 1114 ntBASIC15.14■□□□□ 0.01
COL28A1Q2UY09 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 TIMM17BP1-201ENST00000545713 516 ntBASIC15.14■□□□□ 0.01
COL28A1Q2UY09 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 RARRES2P5-201ENST00000564013 466 ntBASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms