Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.31■□□□□ 0.2
PTPN9P43378 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 AC000095.1-201ENST00000603208 874 ntBASIC16.31■□□□□ 0.2
PTPN9P43378 AL391069.4-201ENST00000609583 481 ntBASIC16.31■□□□□ 0.2
PTPN9P43378 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
PTPN9P43378 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.31■□□□□ 0.2
PTPN9P43378 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC16.31■□□□□ 0.2
PTPN9P43378 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PTPN9P43378 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PTPN9P43378 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.31■□□□□ 0.2
PTPN9P43378 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.3■□□□□ 0.2
PTPN9P43378 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.3■□□□□ 0.2
PTPN9P43378 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 AC126365.1-201ENST00000578585 1514 ntBASIC16.3■□□□□ 0.2
PTPN9P43378 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.3■□□□□ 0.2
PTPN9P43378 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.3■□□□□ 0.2
PTPN9P43378 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.3■□□□□ 0.2
PTPN9P43378 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.3■□□□□ 0.2
PTPN9P43378 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.3■□□□□ 0.2
PTPN9P43378 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.3■□□□□ 0.2
PTPN9P43378 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
PTPN9P43378 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.3■□□□□ 0.2
PTPN9P43378 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.3■□□□□ 0.2
PTPN9P43378 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.3■□□□□ 0.2
PTPN9P43378 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.3■□□□□ 0.2
PTPN9P43378 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.3■□□□□ 0.2
PTPN9P43378 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.3■□□□□ 0.2
PTPN9P43378 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.3■□□□□ 0.2
PTPN9P43378 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.3■□□□□ 0.2
PTPN9P43378 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PTPN9P43378 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PTPN9P43378 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.3■□□□□ 0.2
PTPN9P43378 HYMAI-201ENST00000635591 3347 ntBASIC16.3■□□□□ 0.2
PTPN9P43378 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.3■□□□□ 0.2
PTPN9P43378 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.3■□□□□ 0.2
PTPN9P43378 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.3■□□□□ 0.2
PTPN9P43378 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN9P43378 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN9P43378 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
PTPN9P43378 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.29■□□□□ 0.2
PTPN9P43378 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN9P43378 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
PTPN9P43378 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN9P43378 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 AC006486.2-201ENST00000624246 2199 ntBASIC16.29■□□□□ 0.2
PTPN9P43378 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.29■□□□□ 0.2
PTPN9P43378 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
PTPN9P43378 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.29■□□□□ 0.2
PTPN9P43378 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.29■□□□□ 0.2
PTPN9P43378 AL589987.1-201ENST00000453380 819 ntBASIC16.29■□□□□ 0.2
PTPN9P43378 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN9P43378 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN9P43378 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
PTPN9P43378 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN9P43378 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms