Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
HMGB1P09429 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC18.53■□□□□ 0.56
HMGB1P09429 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
HMGB1P09429 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
HMGB1P09429 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC18.53■□□□□ 0.56
HMGB1P09429 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.53■□□□□ 0.56
HMGB1P09429 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC18.53■□□□□ 0.56
HMGB1P09429 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC18.53■□□□□ 0.56
HMGB1P09429 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.53■□□□□ 0.56
HMGB1P09429 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.53■□□□□ 0.56
HMGB1P09429 AC015910.1-201ENST00000579400 975 ntBASIC18.53■□□□□ 0.56
HMGB1P09429 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.53■□□□□ 0.56
HMGB1P09429 AL109936.8-201ENST00000641772 604 ntBASIC18.53■□□□□ 0.56
HMGB1P09429 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC18.53■□□□□ 0.56
HMGB1P09429 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.53■□□□□ 0.56
HMGB1P09429 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGB1P09429 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGB1P09429 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGB1P09429 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGB1P09429 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGB1P09429 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGB1P09429 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGB1P09429 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC18.52■□□□□ 0.56
HMGB1P09429 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGB1P09429 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGB1P09429 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.52■□□□□ 0.56
HMGB1P09429 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.52■□□□□ 0.56
HMGB1P09429 RAD18-204ENST00000418463 563 ntTSL 4 BASIC18.52■□□□□ 0.56
HMGB1P09429 RAD18-205ENST00000421052 582 ntTSL 3 BASIC18.52■□□□□ 0.56
HMGB1P09429 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC18.52■□□□□ 0.56
HMGB1P09429 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.52■□□□□ 0.56
HMGB1P09429 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.52■□□□□ 0.56
HMGB1P09429 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
HMGB1P09429 GPALPP1-207ENST00000611650 899 ntBASIC18.52■□□□□ 0.56
HMGB1P09429 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
HMGB1P09429 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
HMGB1P09429 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HMGB1P09429 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC18.52■□□□□ 0.56
HMGB1P09429 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
HMGB1P09429 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HMGB1P09429 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
HMGB1P09429 STRN-202ENST00000379213 2254 ntTSL 5 BASIC18.52■□□□□ 0.55
HMGB1P09429 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC18.52■□□□□ 0.55
HMGB1P09429 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
HMGB1P09429 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.55
HMGB1P09429 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HMGB1P09429 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC18.52■□□□□ 0.55
HMGB1P09429 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HMGB1P09429 BTBD7P1-201ENST00000447253 1453 ntBASIC18.52■□□□□ 0.55
HMGB1P09429 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
HMGB1P09429 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
HMGB1P09429 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
HMGB1P09429 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGB1P09429 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC18.51■□□□□ 0.55
HMGB1P09429 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
HMGB1P09429 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC18.51■□□□□ 0.55
HMGB1P09429 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
HMGB1P09429 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGB1P09429 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGB1P09429 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.51■□□□□ 0.55
HMGB1P09429 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGB1P09429 KRT18P64-201ENST00000434946 1219 ntBASIC18.51■□□□□ 0.55
HMGB1P09429 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGB1P09429 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.51■□□□□ 0.55
HMGB1P09429 DUX4L27-201ENST00000554796 1261 ntBASIC18.51■□□□□ 0.55
HMGB1P09429 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
HMGB1P09429 LINC01115-203ENST00000606068 577 ntBASIC18.51■□□□□ 0.55
HMGB1P09429 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.51■□□□□ 0.55
HMGB1P09429 AF228730.6-201ENST00000641497 218 ntBASIC18.51■□□□□ 0.55
HMGB1P09429 AC084121.3-201ENST00000641716 218 ntBASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms