Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
FOXN3O00409 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.83■□□□□ 0.28
FOXN3O00409 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.83■□□□□ 0.28
FOXN3O00409 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.82■□□□□ 0.28
FOXN3O00409 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
FOXN3O00409 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
FOXN3O00409 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.82■□□□□ 0.28
FOXN3O00409 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.82■□□□□ 0.28
FOXN3O00409 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.82■□□□□ 0.28
FOXN3O00409 AC125807.1-201ENST00000483097 614 ntBASIC16.82■□□□□ 0.28
FOXN3O00409 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.82■□□□□ 0.28
FOXN3O00409 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.82■□□□□ 0.28
FOXN3O00409 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.82■□□□□ 0.28
FOXN3O00409 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXN3O00409 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.82■□□□□ 0.28
FOXN3O00409 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXN3O00409 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXN3O00409 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.82■□□□□ 0.28
FOXN3O00409 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.82■□□□□ 0.28
FOXN3O00409 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 TCAF2P1-201ENST00000291129 2421 ntBASIC16.81■□□□□ 0.28
FOXN3O00409 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
FOXN3O00409 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
FOXN3O00409 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 AC023024.2-201ENST00000623561 1993 ntBASIC16.81■□□□□ 0.28
FOXN3O00409 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
FOXN3O00409 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
FOXN3O00409 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.81■□□□□ 0.28
FOXN3O00409 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
FOXN3O00409 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.81■□□□□ 0.28
FOXN3O00409 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.81■□□□□ 0.28
FOXN3O00409 AC092580.3-201ENST00000430932 139 ntBASIC16.81■□□□□ 0.28
FOXN3O00409 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.81■□□□□ 0.28
FOXN3O00409 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.81■□□□□ 0.28
FOXN3O00409 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.81■□□□□ 0.28
FOXN3O00409 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.81■□□□□ 0.28
FOXN3O00409 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.81■□□□□ 0.28
FOXN3O00409 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.81■□□□□ 0.28
FOXN3O00409 AC069120.2-201ENST00000524091 540 ntBASIC16.81■□□□□ 0.28
FOXN3O00409 AC027369.6-201ENST00000525520 931 ntBASIC16.81■□□□□ 0.28
FOXN3O00409 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.81■□□□□ 0.28
FOXN3O00409 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
FOXN3O00409 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.81■□□□□ 0.28
FOXN3O00409 AC010336.2-201ENST00000564226 506 ntBASIC16.81■□□□□ 0.28
FOXN3O00409 AC140878.1-201ENST00000565277 250 ntBASIC16.81■□□□□ 0.28
FOXN3O00409 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.81■□□□□ 0.28
FOXN3O00409 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.81■□□□□ 0.28
FOXN3O00409 AC073592.8-201ENST00000624126 511 ntBASIC16.81■□□□□ 0.28
FOXN3O00409 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.81■□□□□ 0.28
FOXN3O00409 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.81■□□□□ 0.28
FOXN3O00409 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.81■□□□□ 0.28
FOXN3O00409 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
FOXN3O00409 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.81■□□□□ 0.28
FOXN3O00409 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.81■□□□□ 0.28
FOXN3O00409 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.81■□□□□ 0.28
FOXN3O00409 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
FOXN3O00409 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
FOXN3O00409 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXN3O00409 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms