Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 MPV17-208ENST00000405076 603 ntTSL 5 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 HADH-212ENST00000638621 741 ntTSL 5 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
COL20A1Q9P218 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
COL20A1Q9P218 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC17.62■□□□□ 0.41
COL20A1Q9P218 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
COL20A1Q9P218 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 PFN2-205ENST00000461868 613 ntTSL 2 BASIC17.62■□□□□ 0.41
COL20A1Q9P218 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC17.62■□□□□ 0.41
COL20A1Q9P218 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC17.62■□□□□ 0.41
COL20A1Q9P218 KRT90P-201ENST00000549264 1064 ntBASIC17.62■□□□□ 0.41
COL20A1Q9P218 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.62■□□□□ 0.41
COL20A1Q9P218 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
COL20A1Q9P218 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
COL20A1Q9P218 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
COL20A1Q9P218 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.62■□□□□ 0.41
COL20A1Q9P218 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.62■□□□□ 0.41
COL20A1Q9P218 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
COL20A1Q9P218 REXO1L6P-201ENST00000603433 1515 ntBASIC17.62■□□□□ 0.41
COL20A1Q9P218 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL20A1Q9P218 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL20A1Q9P218 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL20A1Q9P218 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL20A1Q9P218 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL20A1Q9P218 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.61■□□□□ 0.41
COL20A1Q9P218 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL20A1Q9P218 RNU1-114P-201ENST00000365297 166 ntBASIC17.61■□□□□ 0.41
COL20A1Q9P218 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.61■□□□□ 0.41
COL20A1Q9P218 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.61■□□□□ 0.41
COL20A1Q9P218 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.61■□□□□ 0.41
COL20A1Q9P218 CSF2RBP1-201ENST00000447905 391 ntBASIC17.61■□□□□ 0.41
COL20A1Q9P218 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17.61■□□□□ 0.41
COL20A1Q9P218 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC17.61■□□□□ 0.41
COL20A1Q9P218 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.61■□□□□ 0.41
COL20A1Q9P218 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL20A1Q9P218 AP005019.2-201ENST00000615104 511 ntBASIC17.61■□□□□ 0.41
COL20A1Q9P218 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.61■□□□□ 0.41
COL20A1Q9P218 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL20A1Q9P218 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL20A1Q9P218 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL20A1Q9P218 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.61■□□□□ 0.41
COL20A1Q9P218 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.61■□□□□ 0.41
COL20A1Q9P218 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
COL20A1Q9P218 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL20A1Q9P218 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL20A1Q9P218 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.61■□□□□ 0.41
COL20A1Q9P218 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL20A1Q9P218 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL20A1Q9P218 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL20A1Q9P218 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms