Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 AL133499.1-201ENST00000596207 608 ntBASIC18.82■□□□□ 0.6
SNED1Q8TER0 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SNED1Q8TER0 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC18.82■□□□□ 0.6
SNED1Q8TER0 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC18.82■□□□□ 0.6
SNED1Q8TER0 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SNED1Q8TER0 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SNED1Q8TER0 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
SNED1Q8TER0 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SNED1Q8TER0 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SNED1Q8TER0 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.81■□□□□ 0.6
SNED1Q8TER0 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SNED1Q8TER0 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SNED1Q8TER0 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SNED1Q8TER0 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SNED1Q8TER0 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SNED1Q8TER0 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SNED1Q8TER0 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SNED1Q8TER0 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SNED1Q8TER0 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC18.81■□□□□ 0.6
SNED1Q8TER0 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC18.81■□□□□ 0.6
SNED1Q8TER0 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC18.81■□□□□ 0.6
SNED1Q8TER0 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SNED1Q8TER0 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC18.81■□□□□ 0.6
SNED1Q8TER0 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC18.81■□□□□ 0.6
SNED1Q8TER0 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC18.81■□□□□ 0.6
SNED1Q8TER0 RN7SL774P-201ENST00000577467 290 ntBASIC18.81■□□□□ 0.6
SNED1Q8TER0 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
SNED1Q8TER0 AC079336.7-201ENST00000623428 1078 ntBASIC18.81■□□□□ 0.6
SNED1Q8TER0 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC18.81■□□□□ 0.6
SNED1Q8TER0 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
SNED1Q8TER0 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SNED1Q8TER0 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC18.81■□□□□ 0.6
SNED1Q8TER0 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.81■□□□□ 0.6
SNED1Q8TER0 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SNED1Q8TER0 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNED1Q8TER0 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SNED1Q8TER0 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SNED1Q8TER0 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC18.8■□□□□ 0.6
SNED1Q8TER0 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNED1Q8TER0 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SNED1Q8TER0 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNED1Q8TER0 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.8■□□□□ 0.6
SNED1Q8TER0 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNED1Q8TER0 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
SNED1Q8TER0 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SNED1Q8TER0 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SNED1Q8TER0 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNED1Q8TER0 IGF1-203ENST00000392904 761 ntTSL 5 BASIC18.8■□□□□ 0.6
SNED1Q8TER0 PARVG-202ENST00000415224 999 ntTSL 2 BASIC18.8■□□□□ 0.6
SNED1Q8TER0 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC18.8■□□□□ 0.6
SNED1Q8TER0 AC134698.3-201ENST00000523880 214 ntBASIC18.8■□□□□ 0.6
SNED1Q8TER0 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC18.8■□□□□ 0.6
SNED1Q8TER0 MIR3907-201ENST00000579424 151 ntBASIC18.8■□□□□ 0.6
SNED1Q8TER0 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SNED1Q8TER0 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
SNED1Q8TER0 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNED1Q8TER0 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.8■□□□□ 0.6
SNED1Q8TER0 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SNED1Q8TER0 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNED1Q8TER0 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.8■□□□□ 0.6
SNED1Q8TER0 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNED1Q8TER0 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNED1Q8TER0 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNED1Q8TER0 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SNED1Q8TER0 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SNED1Q8TER0 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNED1Q8TER0 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.79■□□□□ 0.6
SNED1Q8TER0 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNED1Q8TER0 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNED1Q8TER0 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.79■□□□□ 0.6
SNED1Q8TER0 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.79■□□□□ 0.6
SNED1Q8TER0 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNED1Q8TER0 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC18.79■□□□□ 0.6
SNED1Q8TER0 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SNED1Q8TER0 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNED1Q8TER0 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNED1Q8TER0 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC18.79■□□□□ 0.6
SNED1Q8TER0 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SNED1Q8TER0 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC18.79■□□□□ 0.6
SNED1Q8TER0 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC18.79■□□□□ 0.6
SNED1Q8TER0 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC18.79■□□□□ 0.6
SNED1Q8TER0 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC18.79■□□□□ 0.6
SNED1Q8TER0 PRKXP1-201ENST00000561423 1122 ntBASIC18.79■□□□□ 0.6
SNED1Q8TER0 NAT9-222ENST00000583476 583 ntTSL 3 BASIC18.79■□□□□ 0.6
SNED1Q8TER0 OR10B1P-201ENST00000601666 907 ntBASIC18.79■□□□□ 0.6
SNED1Q8TER0 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC18.79■□□□□ 0.6
SNED1Q8TER0 DIO1-215ENST00000610607 796 ntTSL 5 BASIC18.79■□□□□ 0.6
SNED1Q8TER0 CU633904.3-201ENST00000624042 1029 ntBASIC18.79■□□□□ 0.6
SNED1Q8TER0 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC18.79■□□□□ 0.6
SNED1Q8TER0 AC007787.1-201ENST00000588095 1583 ntBASIC18.79■□□□□ 0.6
SNED1Q8TER0 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNED1Q8TER0 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SNED1Q8TER0 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNED1Q8TER0 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNED1Q8TER0 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.79■□□□□ 0.6
SNED1Q8TER0 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC18.79■□□□□ 0.6
SNED1Q8TER0 AL158070.2-201ENST00000623713 1621 ntBASIC18.79■□□□□ 0.6
SNED1Q8TER0 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.79■□□□□ 0.6
SNED1Q8TER0 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC18.79■□□□□ 0.6
SNED1Q8TER0 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms