Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 PRELID1P1-202ENST00000567272 903 ntBASIC13.18□□□□□ -0.3
HOXA1P49639 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC13.18□□□□□ -0.3
HOXA1P49639 AC025062.2-201ENST00000605477 670 ntBASIC13.18□□□□□ -0.3
HOXA1P49639 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXA1P49639 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXA1P49639 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXA1P49639 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXA1P49639 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXA1P49639 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXA1P49639 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXA1P49639 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXA1P49639 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
HOXA1P49639 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 AL109954.1-202ENST00000564051 2148 ntBASIC13.18□□□□□ -0.3
HOXA1P49639 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.18□□□□□ -0.3
HOXA1P49639 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
HOXA1P49639 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
HOXA1P49639 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXA1P49639 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
HOXA1P49639 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXA1P49639 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
HOXA1P49639 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXA1P49639 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
HOXA1P49639 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXA1P49639 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXA1P49639 AC069224.1-201ENST00000566372 1715 ntBASIC13.17□□□□□ -0.3
HOXA1P49639 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXA1P49639 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
HOXA1P49639 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 ARMC10P1-201ENST00000313754 855 ntBASIC13.17□□□□□ -0.3
HOXA1P49639 DFFB-203ENST00000341385 572 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXA1P49639 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC13.17□□□□□ -0.3
HOXA1P49639 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXA1P49639 HCG4P8-203ENST00000443049 980 ntBASIC13.17□□□□□ -0.3
HOXA1P49639 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC13.17□□□□□ -0.3
HOXA1P49639 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXA1P49639 AC091304.2-201ENST00000564639 760 ntBASIC13.17□□□□□ -0.3
HOXA1P49639 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXA1P49639 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXA1P49639 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC13.17□□□□□ -0.3
HOXA1P49639 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXA1P49639 MIR1199-201ENST00000621445 119 ntBASIC13.17□□□□□ -0.3
HOXA1P49639 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXA1P49639 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
HOXA1P49639 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
HOXA1P49639 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXA1P49639 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXA1P49639 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
HOXA1P49639 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXA1P49639 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXA1P49639 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXA1P49639 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 AC005622.1-201ENST00000636801 1703 ntBASIC13.16□□□□□ -0.3
HOXA1P49639 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXA1P49639 AC112504.1-201ENST00000623415 1841 ntBASIC13.16□□□□□ -0.3
HOXA1P49639 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
HOXA1P49639 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC13.16□□□□□ -0.3
HOXA1P49639 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXA1P49639 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms