Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
ERCC3P19447 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC18.24■□□□□ 0.51
ERCC3P19447 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
ERCC3P19447 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
ERCC3P19447 REXO1L8P-201ENST00000604378 1897 ntBASIC18.24■□□□□ 0.51
ERCC3P19447 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.24■□□□□ 0.51
ERCC3P19447 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
ERCC3P19447 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC18.24■□□□□ 0.51
ERCC3P19447 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
ERCC3P19447 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ERCC3P19447 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
ERCC3P19447 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
ERCC3P19447 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
ERCC3P19447 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC18.24■□□□□ 0.51
ERCC3P19447 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
ERCC3P19447 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
ERCC3P19447 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.23■□□□□ 0.51
ERCC3P19447 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.23■□□□□ 0.51
ERCC3P19447 FRMD6-AS1-201ENST00000617151 2229 ntBASIC18.23■□□□□ 0.51
ERCC3P19447 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
ERCC3P19447 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
ERCC3P19447 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
ERCC3P19447 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
ERCC3P19447 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
ERCC3P19447 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ERCC3P19447 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ERCC3P19447 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
ERCC3P19447 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
ERCC3P19447 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.23■□□□□ 0.51
ERCC3P19447 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.23■□□□□ 0.51
ERCC3P19447 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.23■□□□□ 0.51
ERCC3P19447 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC18.23■□□□□ 0.51
ERCC3P19447 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18.23■□□□□ 0.51
ERCC3P19447 MIR5189-201ENST00000577370 114 ntBASIC18.23■□□□□ 0.51
ERCC3P19447 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC18.23■□□□□ 0.51
ERCC3P19447 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC18.23■□□□□ 0.51
ERCC3P19447 BRI3BPP1-201ENST00000594224 787 ntBASIC18.23■□□□□ 0.51
ERCC3P19447 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
ERCC3P19447 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC18.23■□□□□ 0.51
ERCC3P19447 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
ERCC3P19447 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ERCC3P19447 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ERCC3P19447 ZBTB45P2-201ENST00000452245 1531 ntBASIC18.23■□□□□ 0.51
ERCC3P19447 AMT-232ENST00000636199 1546 ntTSL 5 BASIC18.23■□□□□ 0.51
ERCC3P19447 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ERCC3P19447 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ERCC3P19447 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.22■□□□□ 0.51
ERCC3P19447 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
ERCC3P19447 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.22■□□□□ 0.51
ERCC3P19447 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
ERCC3P19447 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC18.22■□□□□ 0.51
ERCC3P19447 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
ERCC3P19447 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
ERCC3P19447 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 KRT18P64-201ENST00000434946 1219 ntBASIC18.22■□□□□ 0.51
ERCC3P19447 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
ERCC3P19447 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC18.22■□□□□ 0.51
ERCC3P19447 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC18.22■□□□□ 0.51
ERCC3P19447 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC18.22■□□□□ 0.51
ERCC3P19447 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC18.22■□□□□ 0.51
ERCC3P19447 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.22■□□□□ 0.51
ERCC3P19447 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC18.22■□□□□ 0.51
ERCC3P19447 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC18.22■□□□□ 0.51
ERCC3P19447 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC18.22■□□□□ 0.51
ERCC3P19447 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC18.22■□□□□ 0.51
ERCC3P19447 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC18.22■□□□□ 0.51
ERCC3P19447 RPS24-214ENST00000613865 538 ntTSL 5 BASIC18.22■□□□□ 0.51
ERCC3P19447 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.22■□□□□ 0.51
ERCC3P19447 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC18.22■□□□□ 0.51
ERCC3P19447 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
ERCC3P19447 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
ERCC3P19447 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
ERCC3P19447 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC18.22■□□□□ 0.51
ERCC3P19447 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
ERCC3P19447 SLC9A7P1-201ENST00000554295 3311 ntBASIC18.22■□□□□ 0.51
ERCC3P19447 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC18.22■□□□□ 0.51
ERCC3P19447 AP003680.1-201ENST00000598970 3660 ntBASIC18.22■□□□□ 0.51
ERCC3P19447 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC3P19447 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC18.22■□□□□ 0.51
ERCC3P19447 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
ERCC3P19447 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ERCC3P19447 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ERCC3P19447 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms