Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
CUEDC1Q9NWM3 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
CUEDC1Q9NWM3 AC022616.5-201ENST00000518796 181 ntBASIC22.58■■□□□ 1.21
CUEDC1Q9NWM3 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC22.58■■□□□ 1.21
CUEDC1Q9NWM3 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
CUEDC1Q9NWM3 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CUEDC1Q9NWM3 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC22.58■■□□□ 1.2
CUEDC1Q9NWM3 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.2
CUEDC1Q9NWM3 YBX1P4-201ENST00000392794 808 ntBASIC22.57■■□□□ 1.2
CUEDC1Q9NWM3 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC22.57■■□□□ 1.2
CUEDC1Q9NWM3 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CUEDC1Q9NWM3 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC22.56■■□□□ 1.2
CUEDC1Q9NWM3 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC22.56■■□□□ 1.2
CUEDC1Q9NWM3 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CUEDC1Q9NWM3 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC22.56■■□□□ 1.2
CUEDC1Q9NWM3 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
CUEDC1Q9NWM3 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CUEDC1Q9NWM3 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CUEDC1Q9NWM3 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC22.55■■□□□ 1.2
CUEDC1Q9NWM3 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC22.55■■□□□ 1.2
CUEDC1Q9NWM3 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC22.55■■□□□ 1.2
CUEDC1Q9NWM3 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CUEDC1Q9NWM3 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.54■■□□□ 1.2
CUEDC1Q9NWM3 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CUEDC1Q9NWM3 HES6-204ENST00000409182 863 ntTSL 2 BASIC22.54■■□□□ 1.2
CUEDC1Q9NWM3 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CUEDC1Q9NWM3 AC103724.3-201ENST00000564481 992 ntBASIC22.54■■□□□ 1.2
CUEDC1Q9NWM3 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CUEDC1Q9NWM3 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CUEDC1Q9NWM3 AC090877.2-201ENST00000558441 1738 ntBASIC22.54■■□□□ 1.2
CUEDC1Q9NWM3 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC22.54■■□□□ 1.2
CUEDC1Q9NWM3 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CUEDC1Q9NWM3 AC009299.2-201ENST00000482477 511 ntBASIC22.53■■□□□ 1.2
CUEDC1Q9NWM3 AC120024.1-201ENST00000562672 995 ntBASIC22.53■■□□□ 1.2
CUEDC1Q9NWM3 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.53■■□□□ 1.2
CUEDC1Q9NWM3 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CUEDC1Q9NWM3 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CUEDC1Q9NWM3 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CUEDC1Q9NWM3 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CUEDC1Q9NWM3 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC22.53■■□□□ 1.2
CUEDC1Q9NWM3 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC22.52■■□□□ 1.2
CUEDC1Q9NWM3 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CUEDC1Q9NWM3 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC22.52■■□□□ 1.2
CUEDC1Q9NWM3 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
CUEDC1Q9NWM3 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CUEDC1Q9NWM3 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CUEDC1Q9NWM3 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CUEDC1Q9NWM3 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CUEDC1Q9NWM3 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC22.51■■□□□ 1.19
CUEDC1Q9NWM3 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.51■■□□□ 1.19
CUEDC1Q9NWM3 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC22.51■■□□□ 1.19
CUEDC1Q9NWM3 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CUEDC1Q9NWM3 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
CUEDC1Q9NWM3 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.5■■□□□ 1.19
CUEDC1Q9NWM3 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CUEDC1Q9NWM3 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CUEDC1Q9NWM3 THA1P-201ENST00000590384 1145 ntBASIC22.5■■□□□ 1.19
CUEDC1Q9NWM3 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
CUEDC1Q9NWM3 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
CUEDC1Q9NWM3 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
CUEDC1Q9NWM3 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CUEDC1Q9NWM3 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC22.49■■□□□ 1.19
CUEDC1Q9NWM3 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC22.49■■□□□ 1.19
CUEDC1Q9NWM3 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CUEDC1Q9NWM3 AP003733.4-201ENST00000623785 1697 ntBASIC22.49■■□□□ 1.19
CUEDC1Q9NWM3 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CUEDC1Q9NWM3 KRT18P24-201ENST00000344739 1156 ntBASIC22.49■■□□□ 1.19
CUEDC1Q9NWM3 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC22.49■■□□□ 1.19
CUEDC1Q9NWM3 AC011551.1-201ENST00000614101 683 ntBASIC22.49■■□□□ 1.19
CUEDC1Q9NWM3 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CUEDC1Q9NWM3 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CUEDC1Q9NWM3 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CUEDC1Q9NWM3 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CUEDC1Q9NWM3 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC22.48■■□□□ 1.19
CUEDC1Q9NWM3 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CUEDC1Q9NWM3 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC22.48■■□□□ 1.19
CUEDC1Q9NWM3 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
CUEDC1Q9NWM3 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.47■■□□□ 1.19
CUEDC1Q9NWM3 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CUEDC1Q9NWM3 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CUEDC1Q9NWM3 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CUEDC1Q9NWM3 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CUEDC1Q9NWM3 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CUEDC1Q9NWM3 GAK-223ENST00000628912 497 ntTSL 5 BASIC22.47■■□□□ 1.19
CUEDC1Q9NWM3 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CUEDC1Q9NWM3 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CUEDC1Q9NWM3 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC22.47■■□□□ 1.19
CUEDC1Q9NWM3 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC22.46■■□□□ 1.19
CUEDC1Q9NWM3 GUSBP5-201ENST00000418136 578 ntBASIC22.46■■□□□ 1.19
CUEDC1Q9NWM3 AL031848.2-201ENST00000607670 837 ntBASIC22.46■■□□□ 1.19
CUEDC1Q9NWM3 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC22.46■■□□□ 1.19
CUEDC1Q9NWM3 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC22.46■■□□□ 1.19
CUEDC1Q9NWM3 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
CUEDC1Q9NWM3 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC22.45■■□□□ 1.19
CUEDC1Q9NWM3 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CUEDC1Q9NWM3 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CUEDC1Q9NWM3 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CUEDC1Q9NWM3 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CUEDC1Q9NWM3 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CUEDC1Q9NWM3 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms