Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC22.35■■□□□ 1.17
VPS33AQ96AX1 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC22.35■■□□□ 1.17
VPS33AQ96AX1 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.35■■□□□ 1.17
VPS33AQ96AX1 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
VPS33AQ96AX1 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS33AQ96AX1 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS33AQ96AX1 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS33AQ96AX1 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC22.34■■□□□ 1.17
VPS33AQ96AX1 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
VPS33AQ96AX1 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS33AQ96AX1 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS33AQ96AX1 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC22.34■■□□□ 1.17
VPS33AQ96AX1 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS33AQ96AX1 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
VPS33AQ96AX1 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.17
VPS33AQ96AX1 HLA-L-211ENST00000482052 1765 ntBASIC22.33■■□□□ 1.17
VPS33AQ96AX1 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
VPS33AQ96AX1 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
VPS33AQ96AX1 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC22.33■■□□□ 1.17
VPS33AQ96AX1 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC22.33■■□□□ 1.17
VPS33AQ96AX1 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
VPS33AQ96AX1 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
VPS33AQ96AX1 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC22.33■■□□□ 1.17
VPS33AQ96AX1 TPT1-202ENST00000379055 948 ntTSL 2 BASIC22.33■■□□□ 1.17
VPS33AQ96AX1 REST-210ENST00000638187 1334 ntTSL 5 BASIC22.32■■□□□ 1.16
VPS33AQ96AX1 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
VPS33AQ96AX1 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC22.32■■□□□ 1.16
VPS33AQ96AX1 RP9P-202ENST00000450133 1212 ntBASIC22.32■■□□□ 1.16
VPS33AQ96AX1 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC22.32■■□□□ 1.16
VPS33AQ96AX1 MIR7108-201ENST00000614319 87 ntBASIC22.32■■□□□ 1.16
VPS33AQ96AX1 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
VPS33AQ96AX1 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
VPS33AQ96AX1 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
VPS33AQ96AX1 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.31■■□□□ 1.16
VPS33AQ96AX1 AC012676.1-201ENST00000574705 1949 ntBASIC22.31■■□□□ 1.16
VPS33AQ96AX1 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
VPS33AQ96AX1 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
VPS33AQ96AX1 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
VPS33AQ96AX1 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
VPS33AQ96AX1 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
VPS33AQ96AX1 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
VPS33AQ96AX1 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
VPS33AQ96AX1 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC22.31■■□□□ 1.16
VPS33AQ96AX1 AC093536.1-201ENST00000569153 554 ntBASIC22.31■■□□□ 1.16
VPS33AQ96AX1 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
VPS33AQ96AX1 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
VPS33AQ96AX1 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
VPS33AQ96AX1 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
VPS33AQ96AX1 DUSP8P5-201ENST00000422884 1815 ntBASIC22.3■■□□□ 1.16
VPS33AQ96AX1 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
VPS33AQ96AX1 ECEL1P2-201ENST00000461596 1295 ntBASIC22.3■■□□□ 1.16
VPS33AQ96AX1 RPS2-202ENST00000526522 924 ntTSL 2 BASIC22.3■■□□□ 1.16
VPS33AQ96AX1 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
VPS33AQ96AX1 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC22.3■■□□□ 1.16
VPS33AQ96AX1 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
VPS33AQ96AX1 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
VPS33AQ96AX1 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
VPS33AQ96AX1 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC22.29■■□□□ 1.16
VPS33AQ96AX1 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
VPS33AQ96AX1 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC22.29■■□□□ 1.16
VPS33AQ96AX1 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
VPS33AQ96AX1 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
VPS33AQ96AX1 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22.29■■□□□ 1.16
VPS33AQ96AX1 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC22.29■■□□□ 1.16
VPS33AQ96AX1 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VPS33AQ96AX1 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VPS33AQ96AX1 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VPS33AQ96AX1 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VPS33AQ96AX1 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC22.28■■□□□ 1.16
VPS33AQ96AX1 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC22.28■■□□□ 1.16
VPS33AQ96AX1 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VPS33AQ96AX1 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
VPS33AQ96AX1 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC22.27■■□□□ 1.16
VPS33AQ96AX1 AC022413.1-201ENST00000624602 984 ntBASIC22.27■■□□□ 1.16
VPS33AQ96AX1 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
VPS33AQ96AX1 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS33AQ96AX1 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS33AQ96AX1 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
VPS33AQ96AX1 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
VPS33AQ96AX1 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS33AQ96AX1 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC22.25■■□□□ 1.15
VPS33AQ96AX1 ME2-208ENST00000638937 2471 ntTSL 5 BASIC22.25■■□□□ 1.15
VPS33AQ96AX1 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
VPS33AQ96AX1 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
VPS33AQ96AX1 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.25■■□□□ 1.15
VPS33AQ96AX1 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
VPS33AQ96AX1 MIR639-201ENST00000384974 98 ntBASIC22.25■■□□□ 1.15
VPS33AQ96AX1 PVT1-219ENST00000523427 938 ntTSL 3 BASIC22.25■■□□□ 1.15
VPS33AQ96AX1 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS33AQ96AX1 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS33AQ96AX1 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
VPS33AQ96AX1 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
VPS33AQ96AX1 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
VPS33AQ96AX1 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC22.24■■□□□ 1.15
VPS33AQ96AX1 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC22.24■■□□□ 1.15
VPS33AQ96AX1 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC22.24■■□□□ 1.15
VPS33AQ96AX1 SRP68-213ENST00000629930 165 ntTSL 5 BASIC22.24■■□□□ 1.15
VPS33AQ96AX1 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
VPS33AQ96AX1 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC22.24■■□□□ 1.15
VPS33AQ96AX1 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms