Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HNF4AP41235 LINC01124-201ENST00000409786 2117 ntBASIC22.57■■□□□ 1.2
HNF4AP41235 AC010980.1-201ENST00000587192 1142 ntBASIC22.57■■□□□ 1.2
HNF4AP41235 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC22.57■■□□□ 1.2
HNF4AP41235 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HNF4AP41235 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HNF4AP41235 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HNF4AP41235 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
HNF4AP41235 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC22.57■■□□□ 1.2
HNF4AP41235 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HNF4AP41235 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HNF4AP41235 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC22.56■■□□□ 1.2
HNF4AP41235 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC22.56■■□□□ 1.2
HNF4AP41235 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
HNF4AP41235 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC22.56■■□□□ 1.2
HNF4AP41235 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HNF4AP41235 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HNF4AP41235 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HNF4AP41235 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC22.56■■□□□ 1.2
HNF4AP41235 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
HNF4AP41235 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC22.55■■□□□ 1.2
HNF4AP41235 AC141586.4-201ENST00000624558 1573 ntBASIC22.55■■□□□ 1.2
HNF4AP41235 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.55■■□□□ 1.2
HNF4AP41235 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC22.55■■□□□ 1.2
HNF4AP41235 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HNF4AP41235 AL592295.1-201ENST00000400984 884 ntBASIC22.55■■□□□ 1.2
HNF4AP41235 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
HNF4AP41235 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HNF4AP41235 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
HNF4AP41235 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
HNF4AP41235 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
HNF4AP41235 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
HNF4AP41235 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
HNF4AP41235 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC22.54■■□□□ 1.2
HNF4AP41235 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC22.54■■□□□ 1.2
HNF4AP41235 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
HNF4AP41235 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC22.54■■□□□ 1.2
HNF4AP41235 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC22.54■■□□□ 1.2
HNF4AP41235 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC22.54■■□□□ 1.2
HNF4AP41235 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
HNF4AP41235 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
HNF4AP41235 LINC00543-201ENST00000567234 1845 ntBASIC22.54■■□□□ 1.2
HNF4AP41235 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
HNF4AP41235 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
HNF4AP41235 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HNF4AP41235 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
HNF4AP41235 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
HNF4AP41235 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC22.53■■□□□ 1.2
HNF4AP41235 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HNF4AP41235 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HNF4AP41235 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
HNF4AP41235 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
HNF4AP41235 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HNF4AP41235 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC22.53■■□□□ 1.2
HNF4AP41235 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
HNF4AP41235 LONRF2P2-201ENST00000439212 571 ntBASIC22.53■■□□□ 1.2
HNF4AP41235 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC22.53■■□□□ 1.2
HNF4AP41235 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
HNF4AP41235 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC22.52■■□□□ 1.2
HNF4AP41235 BEX3-202ENST00000372634 753 ntTSL 2 BASIC22.52■■□□□ 1.2
HNF4AP41235 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
HNF4AP41235 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
HNF4AP41235 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
HNF4AP41235 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HNF4AP41235 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
HNF4AP41235 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC22.51■■□□□ 1.19
HNF4AP41235 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
HNF4AP41235 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
HNF4AP41235 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
HNF4AP41235 PVT1_1.1-201ENST00000615125 194 ntBASIC22.51■■□□□ 1.19
HNF4AP41235 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
HNF4AP41235 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
HNF4AP41235 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HNF4AP41235 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.5■■□□□ 1.19
HNF4AP41235 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.5■■□□□ 1.19
HNF4AP41235 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HNF4AP41235 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
HNF4AP41235 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HNF4AP41235 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HNF4AP41235 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC22.49■■□□□ 1.19
HNF4AP41235 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HNF4AP41235 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC22.49■■□□□ 1.19
HNF4AP41235 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HNF4AP41235 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
HNF4AP41235 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
HNF4AP41235 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.48■■□□□ 1.19
HNF4AP41235 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
HNF4AP41235 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
HNF4AP41235 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
HNF4AP41235 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
HNF4AP41235 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
HNF4AP41235 HLA-L-211ENST00000482052 1765 ntBASIC22.48■■□□□ 1.19
HNF4AP41235 KRT8P33-201ENST00000508125 1423 ntBASIC22.48■■□□□ 1.19
HNF4AP41235 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
HNF4AP41235 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
HNF4AP41235 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
HNF4AP41235 AC019171.1-201ENST00000601251 1056 ntBASIC22.47■■□□□ 1.19
HNF4AP41235 AC074183.2-201ENST00000623112 922 ntBASIC22.47■■□□□ 1.19
HNF4AP41235 AC090877.2-201ENST00000558441 1738 ntBASIC22.47■■□□□ 1.19
HNF4AP41235 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms