Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SOX3P41225 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
SOX3P41225 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.85■■□□□ 1.09
SOX3P41225 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SOX3P41225 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SOX3P41225 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SOX3P41225 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
SOX3P41225 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SOX3P41225 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SOX3P41225 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.85■■□□□ 1.09
SOX3P41225 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.85■■□□□ 1.09
SOX3P41225 AC142381.3-201ENST00000568208 1670 ntBASIC21.85■■□□□ 1.09
SOX3P41225 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SOX3P41225 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SOX3P41225 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SOX3P41225 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SOX3P41225 AL035685.1-201ENST00000636663 812 ntBASIC21.84■■□□□ 1.09
SOX3P41225 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SOX3P41225 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.84■■□□□ 1.09
SOX3P41225 AC097639.1-201ENST00000565519 1891 ntBASIC21.83■■□□□ 1.09
SOX3P41225 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SOX3P41225 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
SOX3P41225 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.83■■□□□ 1.09
SOX3P41225 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.83■■□□□ 1.09
SOX3P41225 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
SOX3P41225 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SOX3P41225 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
SOX3P41225 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.82■■□□□ 1.08
SOX3P41225 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
SOX3P41225 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SOX3P41225 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
SOX3P41225 AL592295.1-201ENST00000400984 884 ntBASIC21.82■■□□□ 1.08
SOX3P41225 AC009299.2-201ENST00000482477 511 ntBASIC21.82■■□□□ 1.08
SOX3P41225 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
SOX3P41225 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SOX3P41225 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SOX3P41225 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SOX3P41225 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
SOX3P41225 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SOX3P41225 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SOX3P41225 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.82■■□□□ 1.08
SOX3P41225 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
SOX3P41225 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.81■■□□□ 1.08
SOX3P41225 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.81■■□□□ 1.08
SOX3P41225 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SOX3P41225 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.81■■□□□ 1.08
SOX3P41225 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.81■■□□□ 1.08
SOX3P41225 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
SOX3P41225 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SOX3P41225 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SOX3P41225 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.8■■□□□ 1.08
SOX3P41225 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
SOX3P41225 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.8■■□□□ 1.08
SOX3P41225 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SOX3P41225 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
SOX3P41225 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.8■■□□□ 1.08
SOX3P41225 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.8■■□□□ 1.08
SOX3P41225 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SOX3P41225 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SOX3P41225 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SOX3P41225 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.79■■□□□ 1.08
SOX3P41225 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.79■■□□□ 1.08
SOX3P41225 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SOX3P41225 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SOX3P41225 AC138932.3-201ENST00000567634 1902 ntBASIC21.78■■□□□ 1.08
SOX3P41225 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.78■■□□□ 1.08
SOX3P41225 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SOX3P41225 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.78■■□□□ 1.08
SOX3P41225 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SOX3P41225 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.78■■□□□ 1.08
SOX3P41225 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SOX3P41225 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SOX3P41225 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.78■■□□□ 1.08
SOX3P41225 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
SOX3P41225 AL139125.2-201ENST00000623134 1869 ntBASIC21.77■■□□□ 1.08
SOX3P41225 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SOX3P41225 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SOX3P41225 FOXO3B-201ENST00000395675 1928 ntBASIC21.77■■□□□ 1.08
SOX3P41225 THA1P-201ENST00000590384 1145 ntBASIC21.77■■□□□ 1.08
SOX3P41225 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SOX3P41225 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SOX3P41225 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SOX3P41225 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.77■■□□□ 1.08
SOX3P41225 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
SOX3P41225 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
SOX3P41225 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SOX3P41225 KRT18P24-201ENST00000344739 1156 ntBASIC21.76■■□□□ 1.07
SOX3P41225 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SOX3P41225 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SOX3P41225 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SOX3P41225 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SOX3P41225 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
SOX3P41225 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SOX3P41225 AC022211.4-201ENST00000625094 2161 ntBASIC21.76■■□□□ 1.07
SOX3P41225 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
SOX3P41225 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SOX3P41225 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SOX3P41225 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.75■■□□□ 1.07
SOX3P41225 AC120024.1-201ENST00000562672 995 ntBASIC21.75■■□□□ 1.07
SOX3P41225 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms