Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 H2AFZ-203ENST00000511319 1254 ntTSL 1 (best)38.42■■■■□ 3.743e-28■■■■□ 22.4
YBX3P16989 H2AFZ-202ENST00000511203 1880 ntTSL 234.91■■■■□ 3.183e-28■■■■□ 22.4
YBX3P16989 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.223e-28■■■■□ 22.4
YBX3P16989 H2AFZ-204ENST00000511348 1843 ntTSL 1 (best)15.02■□□□□ -03e-28■■■■□ 22.4
YBX3P16989 H2AFZ-206ENST00000529158 726 ntTSL 314.02□□□□□ -0.173e-28■■■■□ 22.4
YBX3P16989 RALY-205ENST00000442805 871 ntTSL 535.9■■■■□ 3.341e-8■■■■□ 22.4
YBX3P16989 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC29.71■■■□□ 2.351e-8■■■■□ 22.4
YBX3P16989 RALY-202ENST00000333552 786 ntTSL 324.53■■□□□ 1.521e-8■■■■□ 22.4
YBX3P16989 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.591e-8■■■■□ 22.4
YBX3P16989 RALY-210ENST00000493399 513 ntTSL 518.31■□□□□ 0.521e-8■■■■□ 22.4
YBX3P16989 CNOT10-203ENST00000416457 2096 ntTSL 28.14□□□□□ -1.112e-9■■■■□ 22.4
YBX3P16989 ATP5L-207ENST00000533172 336 ntTSL 213.82□□□□□ -0.26e-38■■■■□ 22.4
YBX3P16989 ATP5L-205ENST00000529770 575 ntTSL 28.47□□□□□ -1.056e-38■■■■□ 22.4
YBX3P16989 HSDL2-205ENST00000488101 911 ntTSL 28.79□□□□□ -11e-7■■■■□ 22.4
YBX3P16989 HSDL2-203ENST00000467434 878 ntTSL 58.51□□□□□ -1.051e-7■■■■□ 22.4
YBX3P16989 CUTA-212ENST00000492510 128 ntTSL 314.25□□□□□ -0.131e-6■■■■□ 22.4
YBX3P16989 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC23.56■■□□□ 1.367e-9■■■■□ 22.4
YBX3P16989 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.546e-7■■■■□ 22.3
YBX3P16989 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.416e-7■■■■□ 22.3
YBX3P16989 RELA-211ENST00000527749 771 ntTSL 535.36■■■■□ 3.254e-7■■■■□ 22.3
YBX3P16989 RELA-221ENST00000533187 456 ntTSL 326.3■■□□□ 1.84e-7■■■■□ 22.3
YBX3P16989 RELA-224ENST00000534305 666 ntTSL 323.67■■□□□ 1.384e-7■■■■□ 22.3
YBX3P16989 RELA-215ENST00000529389 992 ntTSL 323.01■■□□□ 1.274e-7■■■■□ 22.3
YBX3P16989 RELA-218ENST00000532776 602 ntTSL 222.04■■□□□ 1.124e-7■■■■□ 22.3
YBX3P16989 RELA-213ENST00000527909 591 ntTSL 521.2■□□□□ 0.984e-7■■■■□ 22.3
YBX3P16989 RELA-222ENST00000533546 569 ntTSL 421.2■□□□□ 0.984e-7■■■■□ 22.3
YBX3P16989 RELA-216ENST00000531238 541 ntTSL 421.2■□□□□ 0.984e-7■■■■□ 22.3
YBX3P16989 RELA-204ENST00000525658 808 ntTSL 219.22■□□□□ 0.674e-7■■■■□ 22.3
YBX3P16989 RELA-225ENST00000534558 692 ntTSL 518.77■□□□□ 0.64e-7■■■■□ 22.3
YBX3P16989 RELA-220ENST00000532999 1341 ntTSL 518.2■□□□□ 0.54e-7■■■■□ 22.3
YBX3P16989 RELA-206ENST00000525858 754 ntTSL 217.99■□□□□ 0.474e-7■■■■□ 22.3
YBX3P16989 RELA-203ENST00000525301 623 ntTSL 317.55■□□□□ 0.44e-7■■■■□ 22.3
YBX3P16989 RELA-210ENST00000527074 585 ntTSL 217.3■□□□□ 0.364e-7■■■■□ 22.3
YBX3P16989 MMS19-219ENST00000495415 1879 ntTSL 516.22■□□□□ 0.194e-7■■■■□ 22.3
YBX3P16989 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.064e-7■■■■□ 22.3
YBX3P16989 PRRC1-206ENST00000513427 837 ntTSL 214.49□□□□□ -0.094e-7■■■■□ 22.3
YBX3P16989 RELA-219ENST00000532879 567 ntTSL 514.47□□□□□ -0.094e-7■■■■□ 22.3
YBX3P16989 SNX29-204ENST00000564791 1633 ntTSL 1 (best)13.21□□□□□ -0.34e-7■■■■□ 22.3
YBX3P16989 MMS19-215ENST00000478452 835 ntTSL 212.12□□□□□ -0.474e-7■■■■□ 22.3
YBX3P16989 RELA-212ENST00000527874 578 ntTSL 411.57□□□□□ -0.564e-7■■■■□ 22.3
YBX3P16989 FYB1-205ENST00000506557 688 ntTSL 411.33□□□□□ -0.64e-7■■■■□ 22.3
YBX3P16989 PFKFB2-203ENST00000411990 1876 ntTSL 211.18□□□□□ -0.624e-7■■■■□ 22.3
YBX3P16989 SNX29-205ENST00000566228 8171 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.714e-7■■■■□ 22.3
YBX3P16989 SNX29-201ENST00000562510 536 ntTSL 39.51□□□□□ -0.894e-7■■■■□ 22.3
YBX3P16989 FYB1-208ENST00000512138 583 ntTSL 38.7□□□□□ -1.024e-7■■■■□ 22.3
YBX3P16989 FYB1-207ENST00000510188 676 ntTSL 38.49□□□□□ -1.054e-7■■■■□ 22.3
YBX3P16989 FYB1-210ENST00000515010 2578 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.14e-7■■■■□ 22.3
YBX3P16989 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC7.51□□□□□ -1.214e-7■■■■□ 22.3
YBX3P16989 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.294e-7■■■■□ 22.3
YBX3P16989 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC6.75□□□□□ -1.334e-7■■■■□ 22.3
YBX3P16989 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.494e-7■■■■□ 22.3
YBX3P16989 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.574e-7■■■■□ 22.3
YBX3P16989 NOL11-209ENST00000583108 2071 ntTSL 210.29□□□□□ -0.764e-10■■■■□ 22.3
YBX3P16989 MAP1B-202ENST00000504183 572 ntTSL 220.55■□□□□ 0.884e-6■■■■□ 22.3
YBX3P16989 MAN2B1-213ENST00000595880 597 ntTSL 419.72■□□□□ 0.752e-6■■■■□ 22.3
YBX3P16989 MAN2B1-215ENST00000596591 340 ntTSL 510.17□□□□□ -0.782e-6■■■■□ 22.3
YBX3P16989 HIBADH-203ENST00000428288 1669 ntTSL 324.98■■□□□ 1.597e-7■■■■□ 22.3
YBX3P16989 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.727e-7■■■■□ 22.3
YBX3P16989 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.381e-6■■■■□ 22.3
YBX3P16989 CKLF-206ENST00000526149 564 ntTSL 229.15■■■□□ 2.264e-7■■■■□ 22.3
YBX3P16989 SELENOW-205ENST00000598083 546 ntTSL 324.36■■□□□ 1.494e-7■■■■□ 22.3
YBX3P16989 ZER1-202ENST00000414921 715 ntTSL 223.12■■□□□ 1.294e-7■■■■□ 22.3
YBX3P16989 SELENOW-213ENST00000601419 717 ntTSL 221.72■■□□□ 1.074e-7■■■■□ 22.3
YBX3P16989 SELENOW-211ENST00000599874 636 ntTSL 221.44■■□□□ 1.024e-7■■■■□ 22.3
YBX3P16989 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.924e-7■■■■□ 22.3
YBX3P16989 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC20.31■□□□□ 0.844e-7■■■■□ 22.3
YBX3P16989 POLR2E-203ENST00000586215 756 ntTSL 219.87■□□□□ 0.774e-7■■■■□ 22.3
YBX3P16989 HMBOX1-209ENST00000522468 817 ntTSL 319.31■□□□□ 0.687e-7■■■■□ 22.3
YBX3P16989 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC19.18■□□□□ 0.664e-7■■■■□ 22.3
YBX3P16989 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.664e-7■■■■□ 22.3
YBX3P16989 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC18.86■□□□□ 0.614e-7■■■■□ 22.3
YBX3P16989 SELENOW-206ENST00000598273 2437 ntTSL 218.79■□□□□ 0.64e-7■■■■□ 22.3
YBX3P16989 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.514e-7■■■■□ 22.3
YBX3P16989 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.484e-7■■■■□ 22.3
YBX3P16989 ZER1-204ENST00000494461 542 ntTSL 217.91■□□□□ 0.464e-7■■■■□ 22.3
YBX3P16989 SELENOW-207ENST00000598956 1032 ntTSL 216.73■□□□□ 0.274e-7■■■■□ 22.3
YBX3P16989 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC15.09■□□□□ 0.013e-6■■■■□ 22.3
YBX3P16989 FADS2-207ENST00000520145 428 ntTSL 315.03■□□□□ -04e-7■■■■□ 22.3
YBX3P16989 ZER1-203ENST00000427848 460 ntTSL 314.79□□□□□ -0.044e-7■■■■□ 22.3
YBX3P16989 TTLL4-211ENST00000448224 583 ntTSL 514.25□□□□□ -0.133e-6■■■■□ 22.3
YBX3P16989 SELENOW-210ENST00000599627 312 ntTSL 213.4□□□□□ -0.264e-7■■■■□ 22.3
YBX3P16989 ZER1-201ENST00000291900 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.324e-7■■■■□ 22.3
YBX3P16989 ROBO2-209ENST00000487694 5919 ntTSL 5 BASIC13.04□□□□□ -0.324e-7■■■■□ 22.3
YBX3P16989 SLC25A20-204ENST00000479050 694 ntTSL 212.67□□□□□ -0.384e-7■■■■□ 22.3
YBX3P16989 ROBO2-212ENST00000602589 3382 ntTSL 512.31□□□□□ -0.444e-7■■■■□ 22.3
YBX3P16989 SELENOW-214ENST00000601937 674 ntTSL 212.29□□□□□ -0.444e-7■■■■□ 22.3
YBX3P16989 TTLL4-202ENST00000392102 4967 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.673e-6■■■■□ 22.3
YBX3P16989 TTLL4-218ENST00000480472 765 ntTSL 410.36□□□□□ -0.753e-6■■■■□ 22.3
YBX3P16989 TTLL4-214ENST00000465558 1688 ntTSL 29.81□□□□□ -0.843e-6■■■■□ 22.3
YBX3P16989 TTLL4-201ENST00000258398 4730 ntAPPRIS P1 TSL 2 BASIC9.11□□□□□ -0.953e-6■■■■□ 22.3
YBX3P16989 TTLL4-215ENST00000467841 973 ntTSL 49.03□□□□□ -0.963e-6■■■■□ 22.3
YBX3P16989 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC8.95□□□□□ -0.983e-6■■■■□ 22.3
YBX3P16989 ROBO2-202ENST00000461745 8946 ntAPPRIS P2 TSL 1 (best) BASIC8.76□□□□□ -1.014e-7■■■■□ 22.3
YBX3P16989 ROBO2-201ENST00000332191 5437 ntAPPRIS ALT2 TSL 5 BASIC8.76□□□□□ -1.014e-7■■■■□ 22.3
YBX3P16989 HMGXB4-201ENST00000216106 4047 ntAPPRIS P1 TSL 5 BASIC8.6□□□□□ -1.034e-7■■■■□ 22.3
YBX3P16989 HMGXB4-202ENST00000418170 4216 ntTSL 1 (best)8.2□□□□□ -1.14e-7■■■■□ 22.3
YBX3P16989 TTLL4-208ENST00000436668 738 ntTSL 57.74□□□□□ -1.173e-6■■■■□ 22.3
YBX3P16989 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC7.7□□□□□ -1.184e-7■■■■□ 22.3
YBX3P16989 ROBO2-206ENST00000473767 5393 ntTSL 1 (best)7.7□□□□□ -1.184e-7■■■■□ 22.3
YBX3P16989 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC7.69□□□□□ -1.184e-7■■■■□ 22.3
Retrieved 100 of 29,075 protein–RNA pairs in 616.7 ms