RNA–Protein interactions for RNA: ENST00000418170.5

HMGXB4-202, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 4,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-202ENST00000418170 NISCHQ9Y2I1 1504 aa15.87■□□□□ 0.13
HMGXB4-202ENST00000418170 CCDC180Q9P1Z9 1646 aa13.86□□□□□ -0.19
HMGXB4-202ENST00000418170 HRCP23327 699 aa13.65□□□□□ -0.22
HMGXB4-202ENST00000418170 ZCCHC6Q5VYS8 1495 aaKnown RBP13.43□□□□□ -0.26
HMGXB4-202ENST00000418170 PELP1Q8IZL8 1130 aaKnown RBP13.36□□□□□ -0.27
HMGXB4-202ENST00000418170 PPARGC1BQ86YN6 1023 aaKnown RBP13.26□□□□□ -0.29
HMGXB4-202ENST00000418170 PCGF6Q9BYE7 350 aa13.24□□□□□ -0.29
HMGXB4-202ENST00000418170 MYO15BQ96JP2 1530 aa13.23□□□□□ -0.29
HMGXB4-202ENST00000418170 SHROOM4Q9ULL8 1493 aa13.19□□□□□ -0.3
HMGXB4-202ENST00000418170 SUPT5HO00267 1087 aaKnown RBP13.18□□□□□ -0.3
HMGXB4-202ENST00000418170 DCAF1Q9Y4B6 1507 aa13.16□□□□□ -0.3
HMGXB4-202ENST00000418170 CHIC1Q5VXU3 224 aa13.09□□□□□ -0.31
HMGXB4-202ENST00000418170 SCAF1Q9H7N4 1312 aaKnown RBP12.93□□□□□ -0.34
HMGXB4-202ENST00000418170 MYT1Q01538 1121 aa12.89□□□□□ -0.35
HMGXB4-202ENST00000418170 TRIM26Q12899 539 aaPredicted RBP12.86□□□□□ -0.35
HMGXB4-202ENST00000418170 ZEB1P37275 1124 aaPredicted RBP12.83□□□□□ -0.36
HMGXB4-202ENST00000418170 UNC13AQ9UPW8 1703 aa12.77□□□□□ -0.36
HMGXB4-202ENST00000418170 LOC105371045A0A1W2PR82 267 aa12.73□□□□□ -0.37
HMGXB4-202ENST00000418170 NACADO15069 1562 aa12.7□□□□□ -0.38
HMGXB4-202ENST00000418170 ABCC9O60706 1549 aa12.7□□□□□ -0.38
HMGXB4-202ENST00000418170 SCRIBQ14160 1630 aa12.66□□□□□ -0.38
HMGXB4-202ENST00000418170 ACIN1Q9UKV3 1341 aaKnown RBP12.6□□□□□ -0.39
HMGXB4-202ENST00000418170 NEUROD1Q13562 356 aa12.53□□□□□ -0.4
HMGXB4-202ENST00000418170 RB1CC1Q8TDY2 1594 aa12.51□□□□□ -0.41
HMGXB4-202ENST00000418170 BICRAQ9NZM4 1560 aa12.47□□□□□ -0.41
HMGXB4-202ENST00000418170 GTF3C3Q9Y5Q9 886 aa12.47□□□□□ -0.41
HMGXB4-202ENST00000418170 DCAF8L2P0C7V8 631 aa12.45□□□□□ -0.42
HMGXB4-202ENST00000418170 CENPBP07199 599 aaPredicted RBP12.43□□□□□ -0.42
HMGXB4-202ENST00000418170 CECR2Q9BXF3 1484 aa12.37□□□□□ -0.43
HMGXB4-202ENST00000418170 RSF1Q96T23 1441 aaPredicted RBP12.35□□□□□ -0.43
HMGXB4-202ENST00000418170 MROH2BQ7Z745 1585 aa12.33□□□□□ -0.44
HMGXB4-202ENST00000418170 DIEXFQ68CQ4 756 aaKnown RBP12.32□□□□□ -0.44
HMGXB4-202ENST00000418170 WIZO95785 1651 aa12.3□□□□□ -0.44
HMGXB4-202ENST00000418170 EIF4G1Q04637 1599 aaKnown RBP12.26□□□□□ -0.45
HMGXB4-202ENST00000418170 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.24□□□□□ -0.45
HMGXB4-202ENST00000418170 CCER1Q8TC90 406 aaPredicted RBP12.24□□□□□ -0.45
HMGXB4-202ENST00000418170 TRIM41Q8WV44 630 aa12.23□□□□□ -0.45
HMGXB4-202ENST00000418170 SMARCA4P51532 1647 aa12.22□□□□□ -0.45
HMGXB4-202ENST00000418170 BAZ1AQ9NRL2 1556 aaPredicted RBP12.2□□□□□ -0.46
HMGXB4-202ENST00000418170 FAM9AQ8IZU1 332 aaPredicted RBP12.16□□□□□ -0.46
HMGXB4-202ENST00000418170 PEG3Q9GZU2 1588 aa12.15□□□□□ -0.46
HMGXB4-202ENST00000418170 TTBK1Q5TCY1 1321 aaPredicted RBP12.14□□□□□ -0.47
HMGXB4-202ENST00000418170 ZNF316A6NFI3 1004 aaPredicted RBP12.08□□□□□ -0.48
HMGXB4-202ENST00000418170 YTHDC1Q96MU7 727 aaKnown RBP12.05□□□□□ -0.48
HMGXB4-202ENST00000418170 EHMT2Q96KQ7 1210 aa12.04□□□□□ -0.48
HMGXB4-202ENST00000418170 TOP2AP11388 1531 aaKnown RBP12.04□□□□□ -0.48
HMGXB4-202ENST00000418170 SMARCA2P51531 1590 aa12.03□□□□□ -0.48
HMGXB4-202ENST00000418170 MIER1Q8N108 512 aa11.98□□□□□ -0.49
HMGXB4-202ENST00000418170 WRNQ14191 1432 aaPredicted RBP eCLIP11.96□□□□□ -0.49
HMGXB4-202ENST00000418170 BCL11AQ9H165 835 aa11.96□□□□□ -0.5
HMGXB4-202ENST00000418170 CLSPNQ9HAW4 1339 aa11.95□□□□□ -0.5
HMGXB4-202ENST00000418170 ANP32EQ9BTT0 268 aa11.94□□□□□ -0.5
HMGXB4-202ENST00000418170 PABPN1Q86U42 306 aaKnown RBP eCLIP11.91□□□□□ -0.5
HMGXB4-202ENST00000418170 CCDC88BA6NC98 1476 aa11.91□□□□□ -0.5
HMGXB4-202ENST00000418170 ATAD2BQ9ULI0 1458 aa11.88□□□□□ -0.51
HMGXB4-202ENST00000418170 SUPT16HQ9Y5B9 1047 aaKnown RBP11.88□□□□□ -0.51
HMGXB4-202ENST00000418170 TSHZ2Q9NRE2 1034 aa11.85□□□□□ -0.51
HMGXB4-202ENST00000418170 CEP162Q5TB80 1403 aa11.81□□□□□ -0.52
HMGXB4-202ENST00000418170 HMGXB3Q12766 1538 aa11.79□□□□□ -0.52
HMGXB4-202ENST00000418170 CSRNP3Q8WYN3 585 aa11.78□□□□□ -0.52
HMGXB4-202ENST00000418170 ABCC8Q09428 1581 aa11.78□□□□□ -0.52
HMGXB4-202ENST00000418170 PRDM2Q13029 1718 aa11.76□□□□□ -0.53
HMGXB4-202ENST00000418170 TNIKQ9UKE5 1360 aa11.74□□□□□ -0.53
HMGXB4-202ENST00000418170 NCAPD3P42695 1498 aa11.73□□□□□ -0.53
HMGXB4-202ENST00000418170 SYNJ1O43426 1573 aa11.69□□□□□ -0.54
HMGXB4-202ENST00000418170 BAZ1BQ9UIG0 1483 aaKnown RBP11.68□□□□□ -0.54
HMGXB4-202ENST00000418170 CC2D2AQ9P2K1 1620 aa11.68□□□□□ -0.54
HMGXB4-202ENST00000418170 HNRNPUL2Q1KMD3 747 aaKnown RBP11.65□□□□□ -0.55
HMGXB4-202ENST00000418170 BIVM-ERCC5R4GMW8 1640 aa11.64□□□□□ -0.55
HMGXB4-202ENST00000418170 EEA1Q15075 1411 aa11.62□□□□□ -0.55
HMGXB4-202ENST00000418170 SOGA1O94964 1423 aa11.61□□□□□ -0.55
HMGXB4-202ENST00000418170 GOLGA3Q08378 1498 aa11.58□□□□□ -0.56
HMGXB4-202ENST00000418170 TOP2BQ02880 1626 aa11.57□□□□□ -0.56
HMGXB4-202ENST00000418170 UBTFP17480 764 aaKnown RBP11.57□□□□□ -0.56
HMGXB4-202ENST00000418170 RUSC2Q8N2Y8 1516 aa11.57□□□□□ -0.56
HMGXB4-202ENST00000418170 RBM19Q9Y4C8 960 aaKnown RBP11.56□□□□□ -0.56
HMGXB4-202ENST00000418170 CFTRP13569 1480 aa11.54□□□□□ -0.56
HMGXB4-202ENST00000418170 DHX57Q6P158 1386 aaKnown RBP11.53□□□□□ -0.56
HMGXB4-202ENST00000418170 BCANQ96GW7 911 aa11.52□□□□□ -0.56
HMGXB4-202ENST00000418170 PRKCSHP14314 528 aaPredicted RBP11.52□□□□□ -0.57
HMGXB4-202ENST00000418170 CUX1P39880 1505 aa11.51□□□□□ -0.57
HMGXB4-202ENST00000418170 FKBP8Q14318 412 aa11.51□□□□□ -0.57
HMGXB4-202ENST00000418170 VPS8Q8N3P4 1428 aa11.5□□□□□ -0.57
HMGXB4-202ENST00000418170 CLIP1P30622 1438 aa11.48□□□□□ -0.57
HMGXB4-202ENST00000418170 KIF21BO75037 1637 aa11.47□□□□□ -0.57
HMGXB4-202ENST00000418170 KCNH8Q96L42 1107 aa11.46□□□□□ -0.57
HMGXB4-202ENST00000418170 MSH5O43196 834 aa11.46□□□□□ -0.58
HMGXB4-202ENST00000418170 CEP164Q9UPV0 1460 aa11.46□□□□□ -0.58
HMGXB4-202ENST00000418170 NEFLP07196 543 aa11.43□□□□□ -0.58
HMGXB4-202ENST00000418170 APLP2Q06481 763 aa11.43□□□□□ -0.58
HMGXB4-202ENST00000418170 DNAJC5BQ9UF47 199 aa11.42□□□□□ -0.58
HMGXB4-202ENST00000418170 WDR97A6NE52 1622 aa11.42□□□□□ -0.58
HMGXB4-202ENST00000418170 FANCIQ9NVI1 1328 aa11.42□□□□□ -0.58
HMGXB4-202ENST00000418170 MYT1LQ9UL68 1186 aa11.38□□□□□ -0.59
HMGXB4-202ENST00000418170 KIF21AQ7Z4S6 1674 aa11.38□□□□□ -0.59
HMGXB4-202ENST00000418170 CUX2O14529 1486 aa11.37□□□□□ -0.59
HMGXB4-202ENST00000418170 NESP48681 1621 aa11.37□□□□□ -0.59
HMGXB4-202ENST00000418170 ITGAEP38570 1179 aa11.36□□□□□ -0.59
HMGXB4-202ENST00000418170 ERICH6Q7L0X2 663 aa11.34□□□□□ -0.59
HMGXB4-202ENST00000418170 CADPSQ9ULU8 1353 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms