Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
NPHP1O15259 ZNRF2P3-201ENST00000424200 374 ntBASIC29.46■■■□□ 2.31
NPHP1O15259 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
NPHP1O15259 MIR6722-201ENST00000617286 78 ntBASIC29.46■■■□□ 2.31
NPHP1O15259 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
NPHP1O15259 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
NPHP1O15259 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
NPHP1O15259 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC29.45■■■□□ 2.31
NPHP1O15259 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
NPHP1O15259 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
NPHP1O15259 CLTA-206ENST00000466396 695 ntTSL 2 BASIC29.45■■■□□ 2.31
NPHP1O15259 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC29.45■■■□□ 2.3
NPHP1O15259 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC29.44■■■□□ 2.3
NPHP1O15259 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
NPHP1O15259 SRD5A1P1-201ENST00000442297 786 ntBASIC29.44■■■□□ 2.3
NPHP1O15259 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC29.44■■■□□ 2.3
NPHP1O15259 AL136162.1-201ENST00000607711 1078 ntBASIC29.44■■■□□ 2.3
NPHP1O15259 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC29.44■■■□□ 2.3
NPHP1O15259 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
NPHP1O15259 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
NPHP1O15259 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC29.43■■■□□ 2.3
NPHP1O15259 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
NPHP1O15259 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
NPHP1O15259 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC29.42■■■□□ 2.3
NPHP1O15259 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
NPHP1O15259 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC29.41■■■□□ 2.3
NPHP1O15259 RARRES2P6-201ENST00000567333 442 ntBASIC29.41■■■□□ 2.3
NPHP1O15259 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
NPHP1O15259 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
NPHP1O15259 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC29.4■■■□□ 2.3
NPHP1O15259 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
NPHP1O15259 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
NPHP1O15259 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
NPHP1O15259 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
NPHP1O15259 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
NPHP1O15259 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC29.4■■■□□ 2.3
NPHP1O15259 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
NPHP1O15259 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC29.4■■■□□ 2.3
NPHP1O15259 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
NPHP1O15259 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC29.4■■■□□ 2.3
NPHP1O15259 AC135279.3-201ENST00000610945 1311 ntBASIC29.4■■■□□ 2.3
NPHP1O15259 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
NPHP1O15259 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
NPHP1O15259 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
NPHP1O15259 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC29.39■■■□□ 2.3
NPHP1O15259 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC29.39■■■□□ 2.3
NPHP1O15259 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
NPHP1O15259 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC29.39■■■□□ 2.3
NPHP1O15259 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC29.39■■■□□ 2.3
NPHP1O15259 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
NPHP1O15259 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
NPHP1O15259 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC29.38■■■□□ 2.29
NPHP1O15259 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC29.38■■■□□ 2.29
NPHP1O15259 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC29.37■■■□□ 2.29
NPHP1O15259 LGR4-203ENST00000480977 492 ntTSL 2 BASIC29.37■■■□□ 2.29
NPHP1O15259 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC29.37■■■□□ 2.29
NPHP1O15259 AC092666.2-201ENST00000613287 246 ntBASIC29.37■■■□□ 2.29
NPHP1O15259 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC29.36■■■□□ 2.29
NPHP1O15259 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC29.36■■■□□ 2.29
NPHP1O15259 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC29.35■■■□□ 2.29
NPHP1O15259 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC29.35■■■□□ 2.29
NPHP1O15259 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC29.35■■■□□ 2.29
NPHP1O15259 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC29.35■■■□□ 2.29
NPHP1O15259 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC29.34■■■□□ 2.29
NPHP1O15259 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC29.34■■■□□ 2.29
NPHP1O15259 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC29.34■■■□□ 2.29
NPHP1O15259 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC29.34■■■□□ 2.29
NPHP1O15259 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
NPHP1O15259 LBH-205ENST00000407930 756 ntTSL 2 BASIC29.33■■■□□ 2.29
NPHP1O15259 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC29.33■■■□□ 2.29
NPHP1O15259 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC29.33■■■□□ 2.29
NPHP1O15259 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC29.33■■■□□ 2.29
NPHP1O15259 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
NPHP1O15259 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC29.33■■■□□ 2.29
NPHP1O15259 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
NPHP1O15259 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
NPHP1O15259 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC29.32■■■□□ 2.28
NPHP1O15259 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC29.32■■■□□ 2.28
NPHP1O15259 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC29.32■■■□□ 2.28
NPHP1O15259 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
NPHP1O15259 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC29.32■■■□□ 2.28
NPHP1O15259 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
NPHP1O15259 AC024257.2-201ENST00000549699 147 ntBASIC29.31■■■□□ 2.28
NPHP1O15259 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC29.31■■■□□ 2.28
NPHP1O15259 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC29.3■■■□□ 2.28
NPHP1O15259 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC29.3■■■□□ 2.28
NPHP1O15259 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC29.3■■■□□ 2.28
NPHP1O15259 HYI-206ENST00000372434 1025 ntTSL 5 BASIC29.3■■■□□ 2.28
NPHP1O15259 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC29.3■■■□□ 2.28
NPHP1O15259 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC29.3■■■□□ 2.28
NPHP1O15259 AC097639.1-201ENST00000565519 1891 ntBASIC29.29■■■□□ 2.28
NPHP1O15259 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC29.29■■■□□ 2.28
NPHP1O15259 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
NPHP1O15259 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC29.29■■■□□ 2.28
NPHP1O15259 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC29.29■■■□□ 2.28
NPHP1O15259 EDA-201ENST00000338901 1233 ntBASIC29.29■■■□□ 2.28
NPHP1O15259 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
NPHP1O15259 AL355001.2-201ENST00000620617 1191 ntBASIC29.29■■■□□ 2.28
NPHP1O15259 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
NPHP1O15259 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms