Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AL139125.2-201ENST00000623134 1869 ntBASIC31.35■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC31.33■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC31.32■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC31.32■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 MIR6765-201ENST00000614092 87 ntBASIC31.32■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC31.31■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC31.29■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 RPS2P7-201ENST00000447334 885 ntBASIC31.29■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC31.28■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC31.28■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 LINC01124-201ENST00000409786 2117 ntBASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC31.26■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC31.26■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC31.25■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 FOXO3B-201ENST00000395675 1928 ntBASIC31.25■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 RALB-208ENST00000631312 311 ntTSL 5 BASIC31.24■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC31.24■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC31.24■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC31.24■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC31.24■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC31.23■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC31.23■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 BHLHE23-202ENST00000612929 1109 ntBASIC31.23■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC31.23■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC31.23■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 AC010980.1-201ENST00000587192 1142 ntBASIC31.22■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC31.22■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC31.21■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC31.21■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 PVT1_1.1-201ENST00000615125 194 ntBASIC31.21■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC31.21■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC31.2■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC31.2■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC31.2■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC31.19■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC31.19■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 YBX1P4-201ENST00000392794 808 ntBASIC31.19■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC31.19■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC31.19■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC31.18■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC31.18■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms