Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC42Q96M95 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC42Q96M95 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC42Q96M95 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC42Q96M95 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC42Q96M95 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC42Q96M95 AKAP8P1-201ENST00000434743 1349 ntBASIC17.06■□□□□ 0.32
CCDC42Q96M95 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC42Q96M95 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 RNA5SP410-201ENST00000516285 106 ntBASIC17.06■□□□□ 0.32
CCDC42Q96M95 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 AC027307.2-201ENST00000591252 911 ntBASIC17.06■□□□□ 0.32
CCDC42Q96M95 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC42Q96M95 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC42Q96M95 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC42Q96M95 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC42Q96M95 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
CCDC42Q96M95 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC42Q96M95 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 GPI-205ENST00000586425 1799 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC42Q96M95 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC42Q96M95 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC42Q96M95 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC42Q96M95 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.05■□□□□ 0.32
CCDC42Q96M95 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC42Q96M95 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.05■□□□□ 0.32
CCDC42Q96M95 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.05■□□□□ 0.32
CCDC42Q96M95 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC42Q96M95 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.05■□□□□ 0.32
CCDC42Q96M95 AL513190.1-201ENST00000621254 727 ntBASIC17.05■□□□□ 0.32
CCDC42Q96M95 AC008267.7-201ENST00000624570 1194 ntBASIC17.05■□□□□ 0.32
CCDC42Q96M95 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC42Q96M95 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CCDC42Q96M95 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC42Q96M95 AL365209.1-201ENST00000624418 6473 ntBASIC17.05■□□□□ 0.32
CCDC42Q96M95 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CCDC42Q96M95 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC42Q96M95 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC42Q96M95 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 KRT8P37-201ENST00000451609 1420 ntBASIC17.04■□□□□ 0.32
CCDC42Q96M95 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC42Q96M95 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC42Q96M95 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC42Q96M95 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC42Q96M95 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 STRN-202ENST00000379213 2254 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC42Q96M95 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC42Q96M95 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC42Q96M95 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 AC097376.2-205ENST00000610159 5334 ntBASIC17.04■□□□□ 0.32
CCDC42Q96M95 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC42Q96M95 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC42Q96M95 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms