Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 VAT1L-201ENST00000302536 3825 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 PCDHB19P-201ENST00000570871 2371 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 ELK1P1-201ENST00000485699 580 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 KLF6-206ENST00000497571 4656 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 USB1-202ENST00000423271 1217 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 KRT223P-202ENST00000449164 1292 ntBASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 GUCY2D-201ENST00000254854 3698 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 RN7SL589P-201ENST00000481268 310 ntBASIC4.91□□□□□ -1.62
SYNE1Q8NF91 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 GLI4-203ENST00000517468 963 ntTSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 SPTSSB-204ENST00000617024 1292 ntBASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AC116353.5-201ENST00000638148 1699 ntBASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AC046158.3-201ENST00000624947 2558 ntBASIC4.91□□□□□ -1.62
SYNE1Q8NF91 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 MXI1-205ENST00000393134 889 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 KRT8P39-201ENST00000396270 1433 ntBASIC4.91□□□□□ -1.62
SYNE1Q8NF91 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 PACS1-203ENST00000524815 628 ntTSL 4 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AC123567.1-201ENST00000548294 1261 ntBASIC4.91□□□□□ -1.62
SYNE1Q8NF91 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms