Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.92■□□□□ 0.14
PTPN4P29074 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN4P29074 LINC00552-201ENST00000625151 2579 ntBASIC15.92■□□□□ 0.14
PTPN4P29074 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
PTPN4P29074 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN4P29074 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
PTPN4P29074 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN4P29074 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN4P29074 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN4P29074 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
PTPN4P29074 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
PTPN4P29074 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN4P29074 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN4P29074 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.92■□□□□ 0.14
PTPN4P29074 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
PTPN4P29074 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
PTPN4P29074 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN4P29074 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
PTPN4P29074 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
PTPN4P29074 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
PTPN4P29074 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.91■□□□□ 0.14
PTPN4P29074 AL627223.1-201ENST00000416693 442 ntBASIC15.91■□□□□ 0.14
PTPN4P29074 FAM8A3P-201ENST00000427218 844 ntBASIC15.91■□□□□ 0.14
PTPN4P29074 AC005237.2-201ENST00000434368 219 ntBASIC15.91■□□□□ 0.14
PTPN4P29074 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.91■□□□□ 0.14
PTPN4P29074 KRT8P48-201ENST00000515599 1220 ntBASIC15.91■□□□□ 0.14
PTPN4P29074 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.91■□□□□ 0.14
PTPN4P29074 MIR4492-201ENST00000581627 80 ntBASIC15.91■□□□□ 0.14
PTPN4P29074 AC093512.1-201ENST00000617969 520 ntBASIC15.91■□□□□ 0.14
PTPN4P29074 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.91■□□□□ 0.14
PTPN4P29074 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.91■□□□□ 0.14
PTPN4P29074 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.91■□□□□ 0.14
PTPN4P29074 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 AC126755.1-201ENST00000525846 6405 ntBASIC15.91■□□□□ 0.14
PTPN4P29074 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.91■□□□□ 0.14
PTPN4P29074 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
PTPN4P29074 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
PTPN4P29074 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.91■□□□□ 0.14
PTPN4P29074 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.91■□□□□ 0.14
PTPN4P29074 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.91■□□□□ 0.14
PTPN4P29074 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
PTPN4P29074 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.91■□□□□ 0.14
PTPN4P29074 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
PTPN4P29074 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.91■□□□□ 0.14
PTPN4P29074 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.91■□□□□ 0.14
PTPN4P29074 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.91■□□□□ 0.14
PTPN4P29074 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 AC013726.1-201ENST00000563747 2285 ntBASIC15.91■□□□□ 0.14
PTPN4P29074 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN4P29074 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.91■□□□□ 0.14
PTPN4P29074 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN4P29074 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.9■□□□□ 0.14
PTPN4P29074 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
PTPN4P29074 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
PTPN4P29074 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
PTPN4P29074 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN4P29074 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN4P29074 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN4P29074 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN4P29074 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
PTPN4P29074 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN4P29074 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.9■□□□□ 0.14
PTPN4P29074 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN4P29074 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.9■□□□□ 0.14
PTPN4P29074 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.9■□□□□ 0.14
PTPN4P29074 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.9■□□□□ 0.14
PTPN4P29074 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.9■□□□□ 0.14
PTPN4P29074 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
PTPN4P29074 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.9■□□□□ 0.14
PTPN4P29074 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN4P29074 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
PTPN4P29074 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN4P29074 TFAMP1-201ENST00000412727 736 ntBASIC15.9■□□□□ 0.14
PTPN4P29074 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.9■□□□□ 0.14
PTPN4P29074 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN4P29074 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.9■□□□□ 0.14
PTPN4P29074 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.9■□□□□ 0.14
PTPN4P29074 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms