Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CIITAP33076 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.67■□□□□ 0.42
CIITAP33076 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.67■□□□□ 0.42
CIITAP33076 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CIITAP33076 AC084364.1-201ENST00000551967 1556 ntBASIC17.67■□□□□ 0.42
CIITAP33076 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CIITAP33076 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CIITAP33076 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CIITAP33076 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CIITAP33076 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CIITAP33076 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CIITAP33076 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CIITAP33076 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.67■□□□□ 0.42
CIITAP33076 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CIITAP33076 NME2P1-201ENST00000426182 414 ntBASIC17.67■□□□□ 0.42
CIITAP33076 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.67■□□□□ 0.42
CIITAP33076 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CIITAP33076 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.67■□□□□ 0.42
CIITAP33076 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CIITAP33076 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC17.67■□□□□ 0.42
CIITAP33076 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
CIITAP33076 AL049840.4-201ENST00000602422 811 ntBASIC17.67■□□□□ 0.42
CIITAP33076 WFDC1-204ENST00000613603 549 ntBASIC17.67■□□□□ 0.42
CIITAP33076 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC17.67■□□□□ 0.42
CIITAP33076 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CIITAP33076 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CIITAP33076 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CIITAP33076 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CIITAP33076 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC17.67■□□□□ 0.42
CIITAP33076 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CIITAP33076 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CIITAP33076 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CIITAP33076 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CIITAP33076 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CIITAP33076 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.67■□□□□ 0.42
CIITAP33076 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CIITAP33076 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CIITAP33076 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CIITAP33076 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CIITAP33076 DRD5P1-201ENST00000456605 1438 ntBASIC17.66■□□□□ 0.42
CIITAP33076 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.66■□□□□ 0.42
CIITAP33076 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.66■□□□□ 0.42
CIITAP33076 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC17.66■□□□□ 0.42
CIITAP33076 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 SUN1-204ENST00000403868 978 ntTSL 2 BASIC17.66■□□□□ 0.42
CIITAP33076 COX5BP8-201ENST00000416911 349 ntBASIC17.66■□□□□ 0.42
CIITAP33076 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.66■□□□□ 0.42
CIITAP33076 RPL13AP25-201ENST00000484130 612 ntBASIC17.66■□□□□ 0.42
CIITAP33076 AC026410.3-201ENST00000514280 936 ntBASIC17.66■□□□□ 0.42
CIITAP33076 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.66■□□□□ 0.42
CIITAP33076 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.66■□□□□ 0.42
CIITAP33076 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CIITAP33076 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC17.66■□□□□ 0.42
CIITAP33076 AC020658.6-201ENST00000623564 1870 ntBASIC17.66■□□□□ 0.42
CIITAP33076 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CIITAP33076 AC090616.6-203ENST00000579186 1945 ntBASIC17.66■□□□□ 0.42
CIITAP33076 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC17.66■□□□□ 0.42
CIITAP33076 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.66■□□□□ 0.42
CIITAP33076 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC17.66■□□□□ 0.42
CIITAP33076 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CIITAP33076 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CIITAP33076 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CIITAP33076 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CIITAP33076 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.65■□□□□ 0.42
CIITAP33076 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.65■□□□□ 0.42
CIITAP33076 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CIITAP33076 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.65■□□□□ 0.42
CIITAP33076 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.65■□□□□ 0.42
CIITAP33076 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CIITAP33076 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CIITAP33076 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CIITAP33076 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CIITAP33076 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.65■□□□□ 0.42
CIITAP33076 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CIITAP33076 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CIITAP33076 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC17.65■□□□□ 0.42
CIITAP33076 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.65■□□□□ 0.42
CIITAP33076 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC17.65■□□□□ 0.42
CIITAP33076 CR383656.12-201ENST00000549567 513 ntBASIC17.65■□□□□ 0.42
CIITAP33076 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CIITAP33076 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.65■□□□□ 0.42
CIITAP33076 AC124283.3-201ENST00000570869 594 ntBASIC17.65■□□□□ 0.42
CIITAP33076 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC17.65■□□□□ 0.42
CIITAP33076 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms