Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
RNF40O75150 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RNF40O75150 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.15■□□□□ 0.34
RNF40O75150 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.15■□□□□ 0.34
RNF40O75150 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RNF40O75150 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
RNF40O75150 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RNF40O75150 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.15■□□□□ 0.34
RNF40O75150 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.15■□□□□ 0.34
RNF40O75150 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.15■□□□□ 0.34
RNF40O75150 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RNF40O75150 AL353732.1-201ENST00000569618 1459 ntBASIC17.15■□□□□ 0.34
RNF40O75150 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RNF40O75150 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RNF40O75150 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RNF40O75150 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RNF40O75150 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RNF40O75150 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RNF40O75150 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
RNF40O75150 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RNF40O75150 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RNF40O75150 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
RNF40O75150 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RNF40O75150 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC17.15■□□□□ 0.34
RNF40O75150 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RNF40O75150 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RNF40O75150 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.34
RNF40O75150 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC17.14■□□□□ 0.34
RNF40O75150 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.34
RNF40O75150 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
RNF40O75150 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
RNF40O75150 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.14■□□□□ 0.33
RNF40O75150 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.14■□□□□ 0.33
RNF40O75150 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.14■□□□□ 0.33
RNF40O75150 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
RNF40O75150 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 MIR661-201ENST00000384842 89 ntBASIC17.14■□□□□ 0.33
RNF40O75150 UGT1A2P-201ENST00000454886 866 ntBASIC17.14■□□□□ 0.33
RNF40O75150 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.14■□□□□ 0.33
RNF40O75150 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.14■□□□□ 0.33
RNF40O75150 AC087641.1-201ENST00000557561 1021 ntBASIC17.14■□□□□ 0.33
RNF40O75150 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.14■□□□□ 0.33
RNF40O75150 RN7SL204P-201ENST00000582831 262 ntBASIC17.14■□□□□ 0.33
RNF40O75150 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
RNF40O75150 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.14■□□□□ 0.33
RNF40O75150 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.14■□□□□ 0.33
RNF40O75150 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.14■□□□□ 0.33
RNF40O75150 PAX6-247ENST00000638965 979 ntTSL 5 BASIC17.14■□□□□ 0.33
RNF40O75150 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.14■□□□□ 0.33
RNF40O75150 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
RNF40O75150 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.14■□□□□ 0.33
RNF40O75150 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC17.14■□□□□ 0.33
RNF40O75150 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
RNF40O75150 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.14■□□□□ 0.33
RNF40O75150 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 AL109954.1-202ENST00000564051 2148 ntBASIC17.14■□□□□ 0.33
RNF40O75150 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
RNF40O75150 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RNF40O75150 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 AC016027.1-202ENST00000607927 1699 ntBASIC17.13■□□□□ 0.33
RNF40O75150 WASH6P-202ENST00000359512 1437 ntBASIC17.13■□□□□ 0.33
RNF40O75150 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
RNF40O75150 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC17.13■□□□□ 0.33
RNF40O75150 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
RNF40O75150 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.13■□□□□ 0.33
RNF40O75150 AC005034.1-201ENST00000426657 489 ntBASIC17.13■□□□□ 0.33
RNF40O75150 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.13■□□□□ 0.33
RNF40O75150 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.13■□□□□ 0.33
RNF40O75150 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.13■□□□□ 0.33
RNF40O75150 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.13■□□□□ 0.33
RNF40O75150 SLC25A39P2-201ENST00000537614 270 ntBASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms