Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
BRF1Q92994 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
BRF1Q92994 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.6■□□□□ 0.57
BRF1Q92994 METTL21AP1-201ENST00000438852 635 ntBASIC18.6■□□□□ 0.57
BRF1Q92994 HLA-V-204ENST00000476601 1289 ntBASIC18.6■□□□□ 0.57
BRF1Q92994 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC18.6■□□□□ 0.57
BRF1Q92994 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.6■□□□□ 0.57
BRF1Q92994 AC015911.4-201ENST00000588022 1070 ntBASIC18.6■□□□□ 0.57
BRF1Q92994 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRF1Q92994 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRF1Q92994 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
BRF1Q92994 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
BRF1Q92994 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BRF1Q92994 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BRF1Q92994 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.6■□□□□ 0.57
BRF1Q92994 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRF1Q92994 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC18.6■□□□□ 0.57
BRF1Q92994 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRF1Q92994 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
BRF1Q92994 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BRF1Q92994 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRF1Q92994 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
BRF1Q92994 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
BRF1Q92994 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
BRF1Q92994 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
BRF1Q92994 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
BRF1Q92994 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.59■□□□□ 0.57
BRF1Q92994 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC18.59■□□□□ 0.57
BRF1Q92994 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.59■□□□□ 0.57
BRF1Q92994 TEX28P1-201ENST00000613479 1221 ntBASIC18.59■□□□□ 0.57
BRF1Q92994 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
BRF1Q92994 TEX28P2-201ENST00000617764 1221 ntBASIC18.59■□□□□ 0.57
BRF1Q92994 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC18.59■□□□□ 0.57
BRF1Q92994 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRF1Q92994 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
BRF1Q92994 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
BRF1Q92994 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
BRF1Q92994 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
BRF1Q92994 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
BRF1Q92994 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC18.58■□□□□ 0.57
BRF1Q92994 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
BRF1Q92994 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
BRF1Q92994 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
BRF1Q92994 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.57
BRF1Q92994 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
BRF1Q92994 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
BRF1Q92994 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
BRF1Q92994 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
BRF1Q92994 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC18.58■□□□□ 0.57
BRF1Q92994 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BRF1Q92994 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC18.58■□□□□ 0.56
BRF1Q92994 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.58■□□□□ 0.56
BRF1Q92994 LBH-203ENST00000404397 543 ntTSL 4 BASIC18.58■□□□□ 0.56
BRF1Q92994 AC074338.1-201ENST00000416825 156 ntBASIC18.58■□□□□ 0.56
BRF1Q92994 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.58■□□□□ 0.56
BRF1Q92994 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC18.58■□□□□ 0.56
BRF1Q92994 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC18.58■□□□□ 0.56
BRF1Q92994 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BRF1Q92994 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.58■□□□□ 0.56
BRF1Q92994 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.58■□□□□ 0.56
BRF1Q92994 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
BRF1Q92994 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.58■□□□□ 0.56
BRF1Q92994 AC006538.3-201ENST00000612495 578 ntBASIC18.58■□□□□ 0.56
BRF1Q92994 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.58■□□□□ 0.56
BRF1Q92994 AL033527.5-202ENST00000641632 1098 ntBASIC18.58■□□□□ 0.56
BRF1Q92994 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC18.58■□□□□ 0.56
BRF1Q92994 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC18.58■□□□□ 0.56
BRF1Q92994 AC112693.3-201ENST00000624819 1983 ntBASIC18.58■□□□□ 0.56
BRF1Q92994 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC18.58■□□□□ 0.56
BRF1Q92994 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BRF1Q92994 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BRF1Q92994 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BRF1Q92994 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BRF1Q92994 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC18.58■□□□□ 0.56
BRF1Q92994 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BRF1Q92994 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC18.58■□□□□ 0.56
BRF1Q92994 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BRF1Q92994 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BRF1Q92994 AC138035.3-201ENST00000622706 2791 ntBASIC18.58■□□□□ 0.56
BRF1Q92994 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BRF1Q92994 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BRF1Q92994 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms