Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 SDHAP3-202ENST00000515467 728 ntBASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 ZNF890P-202ENST00000530367 1156 ntBASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 AC008741.2-201ENST00000612792 3115 ntBASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 AC010491.1-201ENST00000563101 2797 ntBASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 AZGP1P1-201ENST00000411909 902 ntBASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 AC010336.2-201ENST00000564226 506 ntBASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 AL844908.2-201ENST00000609461 460 ntBASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
NUP54Q7Z3B4 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 AC009477.1-201ENST00000452936 217 ntBASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 AL512361.1-201ENST00000554200 418 ntBASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 AL096865.1-201ENST00000606796 927 ntBASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 AJ011932.1-201ENST00000621707 465 ntBASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms