Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
HSPG2P98160 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC9.49□□□□□ -0.89
HSPG2P98160 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
HSPG2P98160 HCG27-204ENST00000424675 895 ntTSL 3 BASIC9.49□□□□□ -0.89
HSPG2P98160 AP002490.2-201ENST00000524791 560 ntBASIC9.49□□□□□ -0.89
HSPG2P98160 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC9.49□□□□□ -0.89
HSPG2P98160 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC9.49□□□□□ -0.89
HSPG2P98160 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC9.49□□□□□ -0.89
HSPG2P98160 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
HSPG2P98160 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC9.49□□□□□ -0.89
HSPG2P98160 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC9.49□□□□□ -0.89
HSPG2P98160 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC9.49□□□□□ -0.89
HSPG2P98160 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
HSPG2P98160 KRT8P21-201ENST00000430398 1491 ntBASIC9.49□□□□□ -0.89
HSPG2P98160 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC9.49□□□□□ -0.89
HSPG2P98160 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
HSPG2P98160 AK6-201ENST00000380818 1183 ntTSL 2 BASIC9.49□□□□□ -0.89
HSPG2P98160 EIF3FP3-201ENST00000434851 1086 ntBASIC9.49□□□□□ -0.89
HSPG2P98160 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC9.49□□□□□ -0.89
HSPG2P98160 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC9.49□□□□□ -0.89
HSPG2P98160 HNRNPA1P42-201ENST00000458678 957 ntBASIC9.49□□□□□ -0.89
HSPG2P98160 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC9.49□□□□□ -0.89
HSPG2P98160 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC9.49□□□□□ -0.89
HSPG2P98160 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
HSPG2P98160 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC9.49□□□□□ -0.89
HSPG2P98160 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
HSPG2P98160 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC9.49□□□□□ -0.89
HSPG2P98160 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC9.49□□□□□ -0.89
HSPG2P98160 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC9.49□□□□□ -0.89
HSPG2P98160 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
HSPG2P98160 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
HSPG2P98160 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC9.49□□□□□ -0.89
HSPG2P98160 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
HSPG2P98160 SNX15-201ENST00000352068 771 ntTSL 5 BASIC9.49□□□□□ -0.89
HSPG2P98160 RBM38-204ENST00000371219 760 ntTSL 2 BASIC9.49□□□□□ -0.89
HSPG2P98160 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC9.49□□□□□ -0.89
HSPG2P98160 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC9.49□□□□□ -0.89
HSPG2P98160 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC9.49□□□□□ -0.89
HSPG2P98160 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC9.49□□□□□ -0.89
HSPG2P98160 AC078925.2-201ENST00000624013 1973 ntBASIC9.49□□□□□ -0.89
HSPG2P98160 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
HSPG2P98160 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC9.49□□□□□ -0.89
HSPG2P98160 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC9.49□□□□□ -0.89
HSPG2P98160 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.89
HSPG2P98160 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.89
HSPG2P98160 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC9.48□□□□□ -0.89
HSPG2P98160 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC9.48□□□□□ -0.89
HSPG2P98160 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 NDUFAB1P1-201ENST00000404262 460 ntBASIC9.48□□□□□ -0.89
HSPG2P98160 HIST2H2BA-201ENST00000412169 381 ntBASIC9.48□□□□□ -0.89
HSPG2P98160 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC9.48□□□□□ -0.89
HSPG2P98160 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC9.48□□□□□ -0.89
HSPG2P98160 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC9.48□□□□□ -0.89
HSPG2P98160 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC9.48□□□□□ -0.89
HSPG2P98160 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC9.48□□□□□ -0.89
HSPG2P98160 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC9.48□□□□□ -0.89
HSPG2P98160 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 AC015909.3-201ENST00000572855 1794 ntBASIC9.48□□□□□ -0.89
HSPG2P98160 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC9.48□□□□□ -0.89
HSPG2P98160 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC9.48□□□□□ -0.89
HSPG2P98160 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC9.48□□□□□ -0.89
HSPG2P98160 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.89
HSPG2P98160 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC9.48□□□□□ -0.89
HSPG2P98160 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC9.48□□□□□ -0.89
HSPG2P98160 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC9.48□□□□□ -0.89
HSPG2P98160 AL139339.2-201ENST00000608063 657 ntBASIC9.48□□□□□ -0.89
HSPG2P98160 PTPN20CP-201ENST00000614090 920 ntBASIC9.48□□□□□ -0.89
HSPG2P98160 MFF-204ENST00000353339 2186 ntTSL 5 BASIC9.48□□□□□ -0.89
HSPG2P98160 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC9.48□□□□□ -0.89
HSPG2P98160 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC9.48□□□□□ -0.89
HSPG2P98160 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 PUDPP3-201ENST00000445368 636 ntBASIC9.48□□□□□ -0.89
HSPG2P98160 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC9.48□□□□□ -0.89
HSPG2P98160 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC9.48□□□□□ -0.89
HSPG2P98160 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC9.48□□□□□ -0.89
HSPG2P98160 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC9.48□□□□□ -0.89
HSPG2P98160 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
HSPG2P98160 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC9.47□□□□□ -0.89
HSPG2P98160 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC9.47□□□□□ -0.89
HSPG2P98160 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms