Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 NKILA-202ENST00000614771 2598 ntBASIC19.9■□□□□ 0.78
NPHP1O15259 HLA-A-202ENST00000376806 1854 ntBASIC19.9■□□□□ 0.78
NPHP1O15259 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.9■□□□□ 0.78
NPHP1O15259 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.9■□□□□ 0.78
NPHP1O15259 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC19.9■□□□□ 0.78
NPHP1O15259 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC19.9■□□□□ 0.78
NPHP1O15259 AC099548.2-209ENST00000480264 625 ntBASIC19.9■□□□□ 0.78
NPHP1O15259 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC19.9■□□□□ 0.78
NPHP1O15259 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC19.9■□□□□ 0.78
NPHP1O15259 AC244093.1-201ENST00000610837 814 ntBASIC19.9■□□□□ 0.78
NPHP1O15259 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC19.9■□□□□ 0.78
NPHP1O15259 AC020907.1-201ENST00000616460 1350 ntBASIC19.9■□□□□ 0.78
NPHP1O15259 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
NPHP1O15259 BNIP3P1-202ENST00000550043 1585 ntBASIC19.9■□□□□ 0.78
NPHP1O15259 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC19.9■□□□□ 0.78
NPHP1O15259 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC19.9■□□□□ 0.78
NPHP1O15259 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
NPHP1O15259 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
NPHP1O15259 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP1O15259 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
NPHP1O15259 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
NPHP1O15259 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
NPHP1O15259 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP1O15259 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP1O15259 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP1O15259 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
NPHP1O15259 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP1O15259 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP1O15259 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
NPHP1O15259 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP1O15259 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP1O15259 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
NPHP1O15259 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP1O15259 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP1O15259 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC19.89■□□□□ 0.77
NPHP1O15259 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC19.89■□□□□ 0.77
NPHP1O15259 AC074338.1-201ENST00000416825 156 ntBASIC19.89■□□□□ 0.77
NPHP1O15259 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC19.89■□□□□ 0.77
NPHP1O15259 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC19.89■□□□□ 0.77
NPHP1O15259 USP40-206ENST00000443711 628 ntTSL 2 BASIC19.89■□□□□ 0.77
NPHP1O15259 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC19.89■□□□□ 0.77
NPHP1O15259 VDAC1P7-201ENST00000462417 847 ntBASIC19.89■□□□□ 0.77
NPHP1O15259 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP1O15259 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP1O15259 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.89■□□□□ 0.77
NPHP1O15259 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP1O15259 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC19.89■□□□□ 0.77
NPHP1O15259 AL592424.1-201ENST00000563624 1536 ntBASIC19.89■□□□□ 0.77
NPHP1O15259 AC120045.2-201ENST00000567334 178 ntBASIC19.89■□□□□ 0.77
NPHP1O15259 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.77
NPHP1O15259 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP1O15259 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP1O15259 HADH-212ENST00000638621 741 ntTSL 5 BASIC19.89■□□□□ 0.77
NPHP1O15259 LOX-206ENST00000639739 1626 ntTSL 5 BASIC19.89■□□□□ 0.77
NPHP1O15259 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
NPHP1O15259 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
NPHP1O15259 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP1O15259 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
NPHP1O15259 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP1O15259 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
NPHP1O15259 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
NPHP1O15259 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.88■□□□□ 0.77
NPHP1O15259 ZBTB45P2-201ENST00000452245 1531 ntBASIC19.88■□□□□ 0.77
NPHP1O15259 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
NPHP1O15259 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
NPHP1O15259 CICP6-201ENST00000457191 2729 ntBASIC19.88■□□□□ 0.77
NPHP1O15259 AC134312.5-201ENST00000568031 1313 ntBASIC19.88■□□□□ 0.77
NPHP1O15259 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
NPHP1O15259 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC19.88■□□□□ 0.77
NPHP1O15259 HAUS4P1-201ENST00000406739 1145 ntBASIC19.88■□□□□ 0.77
NPHP1O15259 BAATP1-201ENST00000412284 1225 ntBASIC19.88■□□□□ 0.77
NPHP1O15259 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC19.88■□□□□ 0.77
NPHP1O15259 EEF1DP4-201ENST00000446006 880 ntBASIC19.88■□□□□ 0.77
NPHP1O15259 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms