Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CTDP1Q9Y5B0 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTDP1Q9Y5B0 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTDP1Q9Y5B0 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
CTDP1Q9Y5B0 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
CTDP1Q9Y5B0 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTDP1Q9Y5B0 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTDP1Q9Y5B0 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
CTDP1Q9Y5B0 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTDP1Q9Y5B0 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CTDP1Q9Y5B0 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 MIR658-201ENST00000385210 100 ntBASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 AL442647.2-201ENST00000429864 857 ntBASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 AC010319.3-201ENST00000597028 470 ntBASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 CU634019.7-201ENST00000624153 1185 ntBASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 FP236241.2-201ENST00000624906 1185 ntBASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTDP1Q9Y5B0 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 KRT43P-201ENST00000434019 910 ntBASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTDP1Q9Y5B0 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 TOMM22P5-201ENST00000416399 439 ntBASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 TMEM14DP-201ENST00000422205 345 ntBASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 AC134915.1-201ENST00000426461 574 ntBASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 HNRNPA1P13-201ENST00000510646 963 ntBASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CTDP1Q9Y5B0 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms