Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 IDS-203ENST00000428056 1213 ntTSL 2 BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 AC106794.1-201ENST00000506935 792 ntBASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 AC020922.3-201ENST00000595064 547 ntBASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 GMFG-209ENST00000600322 622 ntTSL 5 BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 AC012044.1-201ENST00000603431 297 ntBASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 AC092171.5-201ENST00000608012 942 ntBASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 AC006453.1-201ENST00000636037 1257 ntBASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 AL805961.1-203ENST00000641078 1258 ntBASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 AC005622.1-201ENST00000636801 1703 ntBASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.59■□□□□ 0.57
SMC1BQ8NDV3 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMC1BQ8NDV3 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
SMC1BQ8NDV3 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SMC1BQ8NDV3 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMC1BQ8NDV3 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC18.58■□□□□ 0.57
SMC1BQ8NDV3 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMC1BQ8NDV3 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SMC1BQ8NDV3 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC18.58■□□□□ 0.57
SMC1BQ8NDV3 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMC1BQ8NDV3 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SMC1BQ8NDV3 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.58■□□□□ 0.57
SMC1BQ8NDV3 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 AC078991.1-201ENST00000437297 610 ntBASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 AC013355.1-201ENST00000562625 723 ntBASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMC1BQ8NDV3 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 DPM3-202ENST00000368399 517 ntBASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 SUN1-204ENST00000403868 978 ntTSL 2 BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 SYT17-208ENST00000568433 812 ntTSL 3 BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 AL023803.2-201ENST00000620080 638 ntBASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 AC008764.6-201ENST00000595909 2069 ntBASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 TP73-209ENST00000603362 1668 ntTSL 5 BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms