Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SCN1BQ07699 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SCN1BQ07699 IFNL4P1-201ENST00000607083 540 ntBASIC14.22□□□□□ -0.13
SCN1BQ07699 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
SCN1BQ07699 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SCN1BQ07699 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SCN1BQ07699 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.22□□□□□ -0.13
SCN1BQ07699 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.22□□□□□ -0.13
SCN1BQ07699 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.22□□□□□ -0.13
SCN1BQ07699 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
SCN1BQ07699 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SCN1BQ07699 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SCN1BQ07699 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SCN1BQ07699 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
SCN1BQ07699 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SCN1BQ07699 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
SCN1BQ07699 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SCN1BQ07699 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SCN1BQ07699 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
SCN1BQ07699 SNX33P1-201ENST00000592116 1762 ntBASIC14.22□□□□□ -0.13
SCN1BQ07699 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.22□□□□□ -0.13
SCN1BQ07699 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.22□□□□□ -0.13
SCN1BQ07699 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.22□□□□□ -0.13
SCN1BQ07699 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SCN1BQ07699 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
SCN1BQ07699 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC14.21□□□□□ -0.13
SCN1BQ07699 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
SCN1BQ07699 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SCN1BQ07699 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.21□□□□□ -0.13
SCN1BQ07699 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.21□□□□□ -0.13
SCN1BQ07699 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.21□□□□□ -0.13
SCN1BQ07699 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC14.21□□□□□ -0.13
SCN1BQ07699 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
SCN1BQ07699 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SCN1BQ07699 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
SCN1BQ07699 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.21□□□□□ -0.13
SCN1BQ07699 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.21□□□□□ -0.13
SCN1BQ07699 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC14.21□□□□□ -0.13
SCN1BQ07699 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC14.21□□□□□ -0.13
SCN1BQ07699 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC14.21□□□□□ -0.13
SCN1BQ07699 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
SCN1BQ07699 AC004706.3-202ENST00000621574 984 ntBASIC14.21□□□□□ -0.13
SCN1BQ07699 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC14.21□□□□□ -0.13
SCN1BQ07699 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
SCN1BQ07699 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.21□□□□□ -0.13
SCN1BQ07699 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
SCN1BQ07699 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.21□□□□□ -0.13
SCN1BQ07699 AC117489.1-201ENST00000625169 3217 ntBASIC14.21□□□□□ -0.13
SCN1BQ07699 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.21□□□□□ -0.13
SCN1BQ07699 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SCN1BQ07699 AC079781.5-202ENST00000641784 3743 ntBASIC14.21□□□□□ -0.13
SCN1BQ07699 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SCN1BQ07699 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
SCN1BQ07699 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
SCN1BQ07699 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SCN1BQ07699 AC006504.4-201ENST00000592118 1568 ntBASIC14.21□□□□□ -0.14
SCN1BQ07699 AGAP7P-201ENST00000582299 2062 ntBASIC14.21□□□□□ -0.14
SCN1BQ07699 AGAP14-201ENST00000624701 2060 ntBASIC14.21□□□□□ -0.14
SCN1BQ07699 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SCN1BQ07699 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SCN1BQ07699 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC14.21□□□□□ -0.14
SCN1BQ07699 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
SCN1BQ07699 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SCN1BQ07699 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.2□□□□□ -0.14
SCN1BQ07699 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
SCN1BQ07699 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
SCN1BQ07699 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SCN1BQ07699 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SCN1BQ07699 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SCN1BQ07699 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.2□□□□□ -0.14
SCN1BQ07699 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SCN1BQ07699 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.2□□□□□ -0.14
SCN1BQ07699 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.2□□□□□ -0.14
SCN1BQ07699 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SCN1BQ07699 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.2□□□□□ -0.14
SCN1BQ07699 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SCN1BQ07699 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SCN1BQ07699 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
SCN1BQ07699 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SCN1BQ07699 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SCN1BQ07699 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.2□□□□□ -0.14
SCN1BQ07699 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SCN1BQ07699 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms